Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EMO93_RS04865 Genome accession   NZ_CP035003
Coordinates   964239..964709 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain PCFA-221     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 959239..969709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO93_RS04845 coaW 959550..960353 (+) 804 WP_000862732.1 type II pantothenate kinase -
  EMO93_RS04850 - 960483..961154 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  EMO93_RS04855 - 961553..962746 (-) 1194 WP_000183714.1 hypothetical protein -
  EMO93_RS04860 - 962746..963930 (-) 1185 WP_001291508.1 M20 family metallopeptidase -
  EMO93_RS04865 luxS 964239..964709 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  EMO93_RS04870 - 964861..965211 (-) 351 WP_001024035.1 membrane protein -
  EMO93_RS04875 - 965225..966526 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  EMO93_RS04885 deoC 966806..967468 (-) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  EMO93_RS04890 deoD 967782..968492 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  EMO93_RS04895 - 968613..969056 (-) 444 WP_000070865.1 Dps family protein -
  EMO93_RS04900 - 969256..969669 (-) 414 WP_001123309.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=291822 EMO93_RS04865 WP_000164421.1 964239..964709(+) (luxS) [Staphylococcus aureus strain PCFA-221]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=291822 EMO93_RS04865 WP_000164421.1 964239..964709(+) (luxS) [Staphylococcus aureus strain PCFA-221]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404