Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DIE29_RS02820 Genome accession   NZ_CP029331
Coordinates   575732..576118 (-) Length   128 a.a.
NCBI ID   WP_114649150.1    Uniprot ID   -
Organism   Pseudothauera hydrothermalis strain GD-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 570732..581118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIE29_RS02805 - 572612..574753 (-) 2142 WP_108079584.1 methyl-accepting chemotaxis protein -
  DIE29_RS02810 - 574811..575323 (-) 513 WP_114649149.1 chemotaxis protein CheW -
  DIE29_RS02815 - 575327..575692 (-) 366 WP_102040911.1 response regulator -
  DIE29_RS02820 pilG 575732..576118 (-) 387 WP_114649150.1 twitching motility response regulator PilG Regulator
  DIE29_RS02825 - 576211..576363 (-) 153 WP_269467250.1 rubredoxin -
  DIE29_RS02830 thiE 576580..577236 (+) 657 WP_114649152.1 thiamine phosphate synthase -
  DIE29_RS02835 hemL 577268..578554 (+) 1287 WP_114650242.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DIE29_RS02840 - 578551..579723 (+) 1173 WP_102040917.1 UbiH/UbiF family hydroxylase -
  DIE29_RS02845 - 579740..580456 (+) 717 WP_114649153.1 DsbC family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14031.34 Da        Isoelectric Point: 7.8841

>NTDB_id=291716 DIE29_RS02820 WP_114649150.1 575732..576118(-) (pilG) [Pseudothauera hydrothermalis strain GD-2]
MDLSGLKVMVIDDSNTIRRSAEIFLGQAGCQVLLAEDGFDALAKIADHHPDVIFVDIMMPRLDGYQTCALIKKNPRLAAT
PVIMLSSKDGLFDRARGRMVGSDEYLTKPFTKNSLLKTVAEHAPKRAG

Nucleotide


Download         Length: 387 bp        

>NTDB_id=291716 DIE29_RS02820 WP_114649150.1 575732..576118(-) (pilG) [Pseudothauera hydrothermalis strain GD-2]
ATGGACCTGAGCGGACTGAAGGTGATGGTGATCGACGACAGCAACACCATCCGGCGCAGTGCGGAGATCTTTCTCGGCCA
GGCCGGCTGTCAGGTCCTGCTCGCCGAAGATGGCTTCGACGCGCTGGCCAAAATCGCCGACCACCATCCCGACGTGATTT
TCGTAGACATCATGATGCCGCGCCTGGACGGCTATCAGACCTGCGCGCTGATCAAAAAAAACCCCCGCCTGGCCGCCACC
CCGGTGATCATGTTGTCCTCCAAGGACGGCTTGTTCGACCGCGCACGCGGCAGAATGGTGGGCTCGGACGAATATCTCAC
CAAACCCTTCACCAAGAACAGCCTGCTCAAAACGGTGGCCGAACATGCCCCGAAGCGGGCCGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.667

93.75

0.625

Multiple sequence alignment