Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY90_RS08815 Genome accession   NZ_CP029327
Coordinates   1873403..1874032 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain A37     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868403..1879032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY90_RS08795 (AOY90_09320) ycbZ 1868804..1870564 (-) 1761 WP_042023127.1 Lon protease family protein -
  AOY90_RS08800 (AOY90_09325) matP 1870750..1871202 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AOY90_RS08805 (AOY90_09330) ompA 1871280..1872320 (-) 1041 WP_001441917.1 porin OmpA -
  AOY90_RS08810 (AOY90_09340) sulA 1872676..1873185 (-) 510 WP_000288721.1 SOS-induced cell division inhibitor SulA -
  AOY90_RS08815 (AOY90_09345) sxy/tfoX 1873403..1874032 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY90_RS08820 (AOY90_09350) yccS 1873995..1876157 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AOY90_RS08825 (AOY90_09355) yccF 1876167..1876613 (-) 447 WP_001261240.1 YccF domain-containing protein -
  AOY90_RS08830 (AOY90_09360) helD 1876736..1878790 (+) 2055 WP_001445330.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=291672 AOY90_RS08815 WP_000839136.1 1873403..1874032(+) (sxy/tfoX) [Escherichia coli strain A37]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=291672 AOY90_RS08815 WP_000839136.1 1873403..1874032(+) (sxy/tfoX) [Escherichia coli strain A37]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment