Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7V14_RS09870 Genome accession   NZ_CP034958
Coordinates   1848678..1850105 (-) Length   475 a.a.
NCBI ID   WP_087534715.1    Uniprot ID   -
Organism   Escherichia coli strain SCEC020026     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843678..1855105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V14_RS09840 (C7V14_09840) yeeZ 1843733..1844557 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  C7V14_RS09845 (C7V14_09845) yeeY 1844603..1845532 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C7V14_RS09850 (C7V14_09850) yoeI 1845747..1845809 (+) 63 WP_010723108.1 membrane protein YoeI -
  C7V14_RS09855 (C7V14_09855) plaP 1845799..1847157 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C7V14_RS09860 (C7V14_09860) tsuA 1847336..1848394 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  C7V14_RS09865 (C7V14_09865) tsuB 1848408..1848635 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C7V14_RS09870 (C7V14_09870) sbcB 1848678..1850105 (-) 1428 WP_087534715.1 exodeoxyribonuclease I Machinery gene
  C7V14_RS09875 (C7V14_09875) dacD 1850314..1851480 (+) 1167 WP_000830171.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C7V14_RS09880 (C7V14_09880) sbmC 1851599..1852072 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  C7V14_RS09885 (C7V14_09885) yeeA 1852271..1853329 (+) 1059 WP_001200891.1 FUSC family protein -
  C7V14_RS09890 (C7V14_09890) tmaR 1853501..1853830 (+) 330 WP_000450409.1 DUF496 family protein -
  C7V14_RS09895 (C7V14_09895) - 1853931..1854122 (-) 192 Protein_1734 EutP/PduV family microcompartment system protein -
  C7V14_RS09900 (C7V14_09900) cobU 1854289..1854834 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54448.70 Da        Isoelectric Point: 5.4700

>NTDB_id=291650 C7V14_RS09870 WP_087534715.1 1848678..1850105(-) (sbcB) [Escherichia coli strain SCEC020026]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTSSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=291650 C7V14_RS09870 WP_087534715.1 1848678..1850105(-) (sbcB) [Escherichia coli strain SCEC020026]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGTCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment