Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC55989_RS20945 Genome accession   NC_011748
Coordinates   4186913..4187581 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli 55989     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4181913..4192581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC55989_RS20915 (EC55989_4096) rfaQ 4182091..4183149 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EC55989_RS20920 (EC55989_4097) waaA 4183562..4184839 (+) 1278 WP_000891571.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EC55989_RS20925 (EC55989_4098) coaD 4184847..4185326 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EC55989_RS20930 (EC55989_4099) mutM 4185365..4186174 (-) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EC55989_RS20935 (EC55989_4100) rpmG 4186272..4186439 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EC55989_RS20940 (EC55989_4101) rpmB 4186460..4186696 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EC55989_RS20945 (EC55989_4103) radC 4186913..4187581 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  EC55989_RS20950 (EC55989_4104) coaBC 4187753..4188973 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EC55989_RS20955 (EC55989_4105) dut 4188951..4189409 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EC55989_RS20960 (EC55989_4106) slmA 4189516..4190112 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EC55989_RS20965 (EC55989_4107) pyrE 4190149..4190790 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EC55989_RS20970 (EC55989_4108) rph 4190856..4191572 (-) 717 WP_001247089.1 ribonuclease PH -
  EC55989_RS20975 (EC55989_4109) yicC 4191699..4192562 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=29165 EC55989_RS20945 WP_001298959.1 4186913..4187581(-) (radC) [Escherichia coli 55989]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=29165 EC55989_RS20945 WP_001298959.1 4186913..4187581(-) (radC) [Escherichia coli 55989]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496