Detailed information NTG0291637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7V14_RS06355
• Genome accession: NZ_CP034958
• Coordinates: 1085554..1086546 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCEC020026
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1080554..1091546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7V14_RS06325 (C7V14_06325)	ispD	1080615..1081325 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C7V14_RS06330 (C7V14_06330)	ispF	1081325..1081804 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7V14_RS06335 (C7V14_06335)	truD	1081801..1082850 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C7V14_RS06340 (C7V14_06340)	surE	1082831..1083592 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
C7V14_RS06345 (C7V14_06345)	pcm	1083586..1084212 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7V14_RS06350 (C7V14_06350)	nlpD	1084397..1085491 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C7V14_RS06355 (C7V14_06355)	rpoS	1085554..1086546 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7V14_RS06360 (C7V14_06360)	ygbN	1086640..1088004 (-)	1365	WP_000104456.1	GntP family transporter	-
C7V14_RS06365 (C7V14_06365)	ygbM	1088093..1088869 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
C7V14_RS06370 (C7V14_06370)	ygbL	1088874..1089512 (-)	639	WP_001278994.1	aldolase	-
C7V14_RS06375 (C7V14_06375)	otnK	1089509..1090771 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=291637 C7V14_RS06355 WP_000081550.1 1085554..1086546(+) (rpoS) [Escherichia coli strain SCEC020026]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=291637 C7V14_RS06355 WP_000081550.1 1085554..1086546(+) (rpoS) [Escherichia coli strain SCEC020026]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715