Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DGM98_RS15720 Genome accession   NZ_CP029275
Coordinates   3598017..3598418 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas citri strain M11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593017..3603418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM98_RS15705 (DGM98_16415) - 3595031..3597067 (-) 2037 WP_007967140.1 methyl-accepting chemotaxis protein -
  DGM98_RS15710 (DGM98_16420) - 3597107..3597637 (-) 531 WP_003482487.1 chemotaxis protein CheW -
  DGM98_RS15715 (DGM98_16425) - 3597637..3597999 (-) 363 WP_005913708.1 response regulator -
  DGM98_RS15720 (DGM98_16430) pilG 3598017..3598418 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  DGM98_RS15725 (DGM98_16435) gshB 3598655..3599605 (+) 951 WP_099802152.1 glutathione synthase -
  DGM98_RS15730 (DGM98_16440) - 3599602..3600477 (+) 876 WP_099802153.1 energy transducer TonB -
  DGM98_RS15735 (DGM98_16445) - 3600765..3601679 (-) 915 WP_007973966.1 ADP-ribosylglycohydrolase family protein -
  DGM98_RS15740 (DGM98_16450) tsaB 3601676..3602401 (-) 726 WP_099802154.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=291552 DGM98_RS15720 WP_005913706.1 3598017..3598418(-) (pilG) [Xanthomonas citri strain M11]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=291552 DGM98_RS15720 WP_005913706.1 3598017..3598418(-) (pilG) [Xanthomonas citri strain M11]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTGATCATGTTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTACTGAGCGCGATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment