Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECE24377A_RS06865 Genome accession   NC_009801
Coordinates   1099799..1100428 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O139:H28 str. E24377A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094799..1105428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS06840 (EcE24377A_1069) ycbZ 1095189..1096949 (-) 1761 WP_000156526.1 Lon protease family protein -
  ECE24377A_RS06845 (EcE24377A_1070) matP 1097135..1097587 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ECE24377A_RS06850 (EcE24377A_1071) ompA 1097662..1098714 (-) 1053 WP_000750419.1 porin OmpA -
  ECE24377A_RS06860 (EcE24377A_1072) sulA 1099071..1099580 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECE24377A_RS06865 (EcE24377A_1075) sxy/tfoX 1099799..1100428 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECE24377A_RS06870 (EcE24377A_1074) yccS 1100391..1102553 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ECE24377A_RS06875 (EcE24377A_1076) yccF 1102563..1103009 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ECE24377A_RS06880 (EcE24377A_1077) helD 1103132..1105186 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=29155 ECE24377A_RS06865 WP_000839153.1 1099799..1100428(+) (sxy/tfoX) [Escherichia coli O139:H28 str. E24377A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=29155 ECE24377A_RS06865 WP_000839153.1 1099799..1100428(+) (sxy/tfoX) [Escherichia coli O139:H28 str. E24377A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment