Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DG474_RS07450 Genome accession   NZ_CP029257
Coordinates   1529063..1529356 (-) Length   97 a.a.
NCBI ID   WP_049519305.1    Uniprot ID   A0AAW7W7J8
Organism   Streptococcus oralis strain CCUG 53468     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1524063..1534356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS07440 (DG474_07570) metF 1525500..1526366 (-) 867 WP_002882688.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  DG474_RS07445 (DG474_07575) metE 1526461..1528710 (-) 2250 WP_049519303.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  DG474_RS07450 (DG474_07580) HI0659 1529063..1529356 (-) 294 WP_049519305.1 helix-turn-helix domain-containing protein Machinery gene
  DG474_RS07455 (DG474_07585) - 1529541..1529906 (-) 366 WP_255777924.1 TIGR02328 family protein -
  DG474_RS07460 (DG474_07590) - 1529890..1530294 (-) 405 WP_049519308.1 YbgA family protein -
  DG474_RS07465 (DG474_07595) - 1530441..1533485 (-) 3045 WP_049550331.1 type I restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10722.39 Da        Isoelectric Point: 5.1991

>NTDB_id=291429 DG474_RS07450 WP_049519305.1 1529063..1529356(-) (HI0659) [Streptococcus oralis strain CCUG 53468]
MKNSAIGSNWKDVRTELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKG

Nucleotide


Download         Length: 294 bp        

>NTDB_id=291429 DG474_RS07450 WP_049519305.1 1529063..1529356(-) (HI0659) [Streptococcus oralis strain CCUG 53468]
ATGAAGAATAGTGCCATTGGAAGTAATTGGAAGGATGTCCGAACAGAACTCTTTACCAAGGAAGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATTATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGTATCAGTCAGAAAAAGCTAGAGGAACTCA
GTGGAGTAAGCCAGCCTGTTATAGCTAGGATGGAGACAGGAAAGACCAGTCCTCAGTTGGATACGGTCTTAAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTTCCACTTGAACAGGAAAAAGGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment