Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DG474_RS01965 Genome accession   NZ_CP029257
Coordinates   403286..404017 (+) Length   243 a.a.
NCBI ID   WP_255778681.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 398286..409017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS01945 (DG474_01985) dnaK 398663..400486 (+) 1824 WP_000034683.1 molecular chaperone DnaK -
  DG474_RS01950 (DG474_01990) dnaJ 400934..402070 (+) 1137 WP_001066307.1 molecular chaperone DnaJ -
  DG474_RS01955 (DG474_02000) - 402511..402798 (-) 288 WP_255778679.1 hypothetical protein -
  DG474_RS01960 (DG474_02005) - 402808..403218 (-) 411 WP_255778680.1 HIT family protein -
  DG474_RS01965 (DG474_02010) pptA 403286..404017 (+) 732 WP_255778681.1 ABC transporter ATP-binding protein Regulator
  DG474_RS01970 (DG474_02015) - 404014..405063 (+) 1050 WP_255778682.1 ABC transporter permease -
  DG474_RS01975 (DG474_02020) ccrZ 405111..405905 (+) 795 WP_093585866.1 cell cycle regulator CcrZ -
  DG474_RS01980 (DG474_02025) trmB 405902..406537 (+) 636 WP_061415776.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DG474_RS01985 (DG474_02030) rimP 406664..407143 (+) 480 WP_000338692.1 ribosome maturation factor RimP -
  DG474_RS01990 (DG474_02035) nusA 407186..408322 (+) 1137 WP_255778684.1 transcription termination factor NusA -
  DG474_RS01995 (DG474_02040) rnpM 408344..408637 (+) 294 WP_000857555.1 RNase P modulator RnpM -
  DG474_RS02000 (DG474_02045) - 408630..408929 (+) 300 WP_001041396.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27181.68 Da        Isoelectric Point: 4.8810

>NTDB_id=291405 DG474_RS01965 WP_255778681.1 403286..404017(+) (pptA) [Streptococcus oralis strain CCUG 53468]
MLEIKNLTGGYIHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTLREDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIGQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAQGNLQQLREAFDMPQASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=291405 DG474_RS01965 WP_255778681.1 403286..404017(+) (pptA) [Streptococcus oralis strain CCUG 53468]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATATTCACGTTCCTGTCTTGAAAGATGTGTCCTTTACCGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGCCTCAACGGTGCTGGGAAATCAACGACTATCAATGAGATAATCGGTCTTTTGACGCCTT
ACAGTGGGGAAATCAAGATTAATGGTTTAACCCTGCGAGAAGATGCGACCAACTATCGCAAGCAGATTGGCTACATCCCA
GAAACGCCTAGCTTGTATGAGGAATTGACCCTCAGAGAGCATATCGAGACGGTTGCCATGGCCTATGGTATTGGGCAAAA
AGTGGCTTTTGATCGTGTGGAACCTTTGTTAAAAATGTTTCGTCTGGATCAAAAATTAGACTGGTTTCCAGTGCATTTCT
CCAAAGGGATGAAGCAGAAAGTCATGATTATCTGTGCCTTTGTGGTGGATCCGAGCCTTTTCATCGTTGATGAGCCTTTC
CTTGGGCTCGATCCGCTGGCCATTTCTGACTTGATTCAGCTTCTAGAAGTAGAAAAGCAAAAAGGCAAGTCCATTCTCAT
GAGTACCCATGTTTTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTCCACAAGGGGGAGGTGCGGGCTCAGG
GGAACCTCCAGCAACTCCGCGAAGCCTTTGACATGCCTCAAGCGAGTTTGAATGACATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment