Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AYP36_RS03670 Genome accession   NZ_CP034808
Coordinates   760076..760681 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 08-3914     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 755076..765681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP36_RS03650 aes 755217..756176 (+) 960 WP_000801803.1 acetyl esterase -
  AYP36_RS03655 hemH 756173..757135 (-) 963 WP_001250105.1 ferrochelatase -
  AYP36_RS03660 adk 757267..757911 (-) 645 WP_001220233.1 adenylate kinase -
  AYP36_RS03665 htpG 758092..759966 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  AYP36_RS03670 recR 760076..760681 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AYP36_RS03675 ybaB 760681..761010 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AYP36_RS03680 dnaX 761063..762994 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  AYP36_RS03685 apt 763123..763674 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  AYP36_RS03690 ybaN 763827..764204 (-) 378 WP_001188905.1 DUF454 family protein -
  AYP36_RS03695 priC 764274..764801 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  AYP36_RS03700 rsmS 764815..764979 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=291366 AYP36_RS03670 WP_001195025.1 760076..760681(-) (recR) [Escherichia coli strain 08-3914]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=291366 AYP36_RS03670 WP_001195025.1 760076..760681(-) (recR) [Escherichia coli strain 08-3914]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACACTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment