Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYP36_RS00920 Genome accession   NZ_CP034808
Coordinates   168832..169461 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 08-3914     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 163832..174461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP36_RS00905 helD 164074..166128 (-) 2055 WP_001301436.1 DNA helicase IV -
  AYP36_RS00910 yccF 166251..166697 (+) 447 WP_001261230.1 YccF domain-containing protein -
  AYP36_RS00915 yccS 166707..168869 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AYP36_RS00920 sxy/tfoX 168832..169461 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AYP36_RS00925 sulA 169680..170189 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AYP36_RS00930 ompA 170546..171586 (+) 1041 WP_000750416.1 porin OmpA -
  AYP36_RS00935 matP 171661..172113 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AYP36_RS00940 ycbZ 172299..174059 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=291359 AYP36_RS00920 WP_000839159.1 168832..169461(-) (sxy/tfoX) [Escherichia coli strain 08-3914]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=291359 AYP36_RS00920 WP_000839159.1 168832..169461(-) (sxy/tfoX) [Escherichia coli strain 08-3914]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995