Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECHS_RS05235 Genome accession   NC_009800
Coordinates   1082752..1083381 (+) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli HS     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077752..1088381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECHS_RS05210 (EcHS_A1064) ycbZ 1078153..1079913 (-) 1761 WP_000156518.1 Lon protease family protein -
  ECHS_RS05215 (EcHS_A1065) matP 1080099..1080551 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECHS_RS05220 (EcHS_A1066) ompA 1080627..1081667 (-) 1041 WP_000750416.1 porin OmpA -
  ECHS_RS05230 (EcHS_A1067) sulA 1082024..1082533 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECHS_RS05235 (EcHS_A1068) sxy/tfoX 1082752..1083381 (+) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECHS_RS05240 (EcHS_A1069) yccS 1083344..1085506 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ECHS_RS05245 (EcHS_A1070) yccF 1085516..1085962 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECHS_RS05250 (EcHS_A1071) helD 1086085..1088139 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=29133 ECHS_RS05235 WP_000839152.1 1082752..1083381(+) (sxy/tfoX) [Escherichia coli HS]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=29133 ECHS_RS05235 WP_000839152.1 1082752..1083381(+) (sxy/tfoX) [Escherichia coli HS]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment