Detailed information NTG0291325

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A1D75_RS21215
• Genome accession: NZ_CP034806
• Coordinates: 4059364..4060356 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2010C-3347
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4054364..4065356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1D75_RS21190	pphB	4055726..4056382 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
A1D75_RS21195	-	4056423..4056659 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A1D75_RS21200	-	4056670..4058097 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A1D75_RS21205	-	4058097..4058690 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A1D75_RS21210	-	4058837..4059244 (+)	408	WP_000175365.1	MarR family winged helix-turn-helix transcriptional regulator	-
A1D75_RS21215	rpoS	4059364..4060356 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A1D75_RS21220	nlpD	4060419..4061513 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
A1D75_RS21225	pcm	4061698..4062324 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A1D75_RS21230	surE	4062318..4063079 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A1D75_RS21235	truD	4063060..4064109 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
A1D75_RS21240	ispF	4064106..4064585 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A1D75_RS21245	ispD	4064585..4065295 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=291325 A1D75_RS21215 WP_000081550.1 4059364..4060356(-) (rpoS) [Escherichia coli strain 2010C-3347]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=291325 A1D75_RS21215 WP_000081550.1 4059364..4060356(-) (rpoS) [Escherichia coli strain 2010C-3347]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715