Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A1D75_RS20955 Genome accession   NZ_CP034806
Coordinates   4010653..4011168 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 2010C-3347     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4005653..4016168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS20930 ygaZ 4006052..4006789 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  A1D75_RS20935 ygaH 4006779..4007114 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  A1D75_RS20940 emrR 4007205..4007735 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A1D75_RS20945 emrA 4007862..4009034 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A1D75_RS20950 emrB 4009051..4010589 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A1D75_RS20955 luxS 4010653..4011168 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  A1D75_RS20960 gshA 4011318..4012874 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  A1D75_RS20965 yqaA 4012947..4013375 (-) 429 WP_001287450.1 YqaA family protein -
  A1D75_RS20970 yqaB 4013372..4013938 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A1D75_RS21000 csrA 4015166..4015351 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=291322 A1D75_RS20955 WP_001130215.1 4010653..4011168(-) (luxS) [Escherichia coli strain 2010C-3347]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=291322 A1D75_RS20955 WP_001130215.1 4010653..4011168(-) (luxS) [Escherichia coli strain 2010C-3347]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725