Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC55989_RS11675 Genome accession   NC_011748
Coordinates   2307305..2307781 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli 55989     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302305..2312781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC55989_RS11645 (EC55989_2254) - 2302469..2303374 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  EC55989_RS11650 (EC55989_2255) - 2303371..2304441 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  EC55989_RS11655 (EC55989_2256) - 2304577..2305260 (+) 684 WP_000775500.1 hypothetical protein -
  EC55989_RS11660 (EC55989_2257) - 2305276..2305686 (+) 411 WP_000846713.1 hypothetical protein -
  EC55989_RS11665 (EC55989_2258) - 2305907..2306728 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  EC55989_RS11670 (EC55989_2259) - 2306810..2307289 (+) 480 WP_000860076.1 antirestriction protein -
  EC55989_RS11675 (EC55989_2260) radC 2307305..2307781 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EC55989_RS11680 (EC55989_2261) yeeT 2307844..2308065 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EC55989_RS11685 (EC55989_2262) cbeA 2308139..2308507 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EC55989_RS11690 (EC55989_2263) cbtA 2308596..2308969 (+) 374 Protein_2237 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EC55989_RS11695 (EC55989_2264) yeeW 2308966..2309160 (+) 195 WP_000988600.1 DUF5983 family protein -
  EC55989_RS28790 - 2309206..2309286 (+) 81 Protein_2239 hypothetical protein -
  EC55989_RS28800 - 2309775..2309957 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EC55989_RS11710 (EC55989_2266) tmaR 2310058..2310387 (-) 330 WP_000450409.1 DUF496 family protein -
  EC55989_RS11715 (EC55989_2267) yeeA 2310559..2311617 (-) 1059 WP_001200905.1 FUSC family protein -
  EC55989_RS11720 (EC55989_2268) sbmC 2311815..2312288 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=29131 EC55989_RS11675 WP_001186773.1 2307305..2307781(+) (radC) [Escherichia coli 55989]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29131 EC55989_RS11675 WP_001186773.1 2307305..2307781(+) (radC) [Escherichia coli 55989]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment