Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A1D75_RS14085 Genome accession   NZ_CP034806
Coordinates   2668003..2668632 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 2010C-3347     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2663003..2673632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS14070 helD 2663245..2665299 (-) 2055 WP_001301436.1 DNA helicase IV -
  A1D75_RS14075 yccF 2665422..2665868 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A1D75_RS14080 yccS 2665878..2668040 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A1D75_RS14085 sxy/tfoX 2668003..2668632 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A1D75_RS14090 sulA 2668851..2669360 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A1D75_RS14095 ompA 2669717..2670757 (+) 1041 WP_000750416.1 porin OmpA -
  A1D75_RS14100 matP 2670833..2671285 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A1D75_RS14105 ycbZ 2671471..2673231 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=291307 A1D75_RS14085 WP_000839159.1 2668003..2668632(-) (sxy/tfoX) [Escherichia coli strain 2010C-3347]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=291307 A1D75_RS14085 WP_000839159.1 2668003..2668632(-) (sxy/tfoX) [Escherichia coli strain 2010C-3347]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment