Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A1D75_RS05440 Genome accession   NZ_CP034806
Coordinates   1161642..1162118 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 2010C-3347     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1156642..1167118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS05390 sbmC 1157134..1157607 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  A1D75_RS05395 yeeA 1157806..1158864 (+) 1059 WP_001202488.1 FUSC family protein -
  A1D75_RS05400 tmaR 1159036..1159365 (+) 330 WP_000450409.1 DUF496 family protein -
  A1D75_RS05405 - 1159466..1159648 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A1D75_RS05410 - 1159711..1159848 (+) 138 Protein_1058 transposase domain-containing protein -
  A1D75_RS05415 - 1160137..1160229 (-) 93 Protein_1059 hypothetical protein -
  A1D75_RS05420 yeeW 1160263..1160457 (-) 195 WP_000988600.1 DUF5983 family protein -
  A1D75_RS05425 cbtA 1160454..1160827 (-) 374 Protein_1061 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A1D75_RS05430 cbeA 1160916..1161284 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A1D75_RS05435 yeeT 1161358..1161579 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A1D75_RS05440 radC 1161642..1162118 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  A1D75_RS05445 - 1162133..1162612 (-) 480 WP_000860079.1 antirestriction protein -
  A1D75_RS05450 - 1162694..1163515 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  A1D75_RS05460 - 1163736..1164146 (-) 411 WP_000846711.1 hypothetical protein -
  A1D75_RS05465 - 1164162..1164845 (-) 684 WP_000775497.1 hypothetical protein -
  A1D75_RS05470 - 1164981..1166051 (-) 1071 WP_000102658.1 patatin-like phospholipase family protein -
  A1D75_RS05475 - 1166048..1166953 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=291295 A1D75_RS05440 WP_001186192.1 1161642..1162118(-) (radC) [Escherichia coli strain 2010C-3347]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=291295 A1D75_RS05440 WP_001186192.1 1161642..1162118(-) (radC) [Escherichia coli strain 2010C-3347]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392