Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A1D75_RS04400 Genome accession   NZ_CP034806
Coordinates   949129..949734 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2010C-3347     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944129..954734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS04370 rsmS 944831..944995 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  A1D75_RS04375 priC 945009..945536 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  A1D75_RS04380 ybaN 945606..945983 (+) 378 WP_001188905.1 DUF454 family protein -
  A1D75_RS04385 apt 946136..946687 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  A1D75_RS04390 dnaX 946816..948747 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  A1D75_RS04395 ybaB 948800..949129 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  A1D75_RS04400 recR 949129..949734 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  A1D75_RS04405 htpG 949844..951718 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  A1D75_RS04410 adk 951899..952543 (+) 645 WP_001220233.1 adenylate kinase -
  A1D75_RS04415 hemH 952675..953637 (+) 963 WP_001250105.1 ferrochelatase -
  A1D75_RS04420 aes 953634..954593 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=291292 A1D75_RS04400 WP_001195025.1 949129..949734(+) (recR) [Escherichia coli strain 2010C-3347]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=291292 A1D75_RS04400 WP_001195025.1 949129..949734(+) (recR) [Escherichia coli strain 2010C-3347]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443