Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A0I22_RS25535 Genome accession   NZ_CP034803
Coordinates   5030856..5031332 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 2009C-3554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5025856..5036332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS25485 sbmC 5026348..5026821 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  A0I22_RS25490 yeeA 5027020..5028078 (+) 1059 WP_001202488.1 FUSC family protein -
  A0I22_RS25495 tmaR 5028250..5028579 (+) 330 WP_000450409.1 DUF496 family protein -
  A0I22_RS25500 - 5028680..5028862 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A0I22_RS25505 - 5028925..5029062 (+) 138 Protein_4894 transposase domain-containing protein -
  A0I22_RS25510 - 5029351..5029443 (-) 93 Protein_4895 hypothetical protein -
  A0I22_RS25515 yeeW 5029477..5029671 (-) 195 WP_000988600.1 DUF5983 family protein -
  A0I22_RS25520 cbtA 5029668..5030041 (-) 374 Protein_4897 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A0I22_RS25525 cbeA 5030130..5030498 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A0I22_RS25530 yeeT 5030572..5030793 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A0I22_RS25535 radC 5030856..5031332 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  A0I22_RS25540 - 5031347..5031826 (-) 480 WP_000860079.1 antirestriction protein -
  A0I22_RS25545 - 5031908..5032729 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  A0I22_RS25555 - 5032950..5033360 (-) 411 WP_000846711.1 hypothetical protein -
  A0I22_RS25560 - 5033376..5034059 (-) 684 WP_000775497.1 hypothetical protein -
  A0I22_RS25565 - 5034195..5035265 (-) 1071 WP_000102658.1 patatin-like phospholipase family protein -
  A0I22_RS25570 - 5035262..5036167 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=291273 A0I22_RS25535 WP_001186192.1 5030856..5031332(-) (radC) [Escherichia coli strain 2009C-3554]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=291273 A0I22_RS25535 WP_001186192.1 5030856..5031332(-) (radC) [Escherichia coli strain 2009C-3554]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392