Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A0I22_RS21640 Genome accession   NZ_CP034803
Coordinates   4243093..4243608 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 2009C-3554     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4238093..4248608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS21595 csrA 4238910..4239095 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A0I22_RS21625 yqaB 4240323..4240889 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A0I22_RS21630 yqaA 4240886..4241314 (+) 429 WP_001287450.1 YqaA family protein -
  A0I22_RS21635 gshA 4241387..4242943 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  A0I22_RS21640 luxS 4243093..4243608 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  A0I22_RS21645 emrB 4243672..4245210 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A0I22_RS21650 emrA 4245227..4246399 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A0I22_RS21655 emrR 4246526..4247056 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A0I22_RS21660 ygaH 4247147..4247482 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  A0I22_RS21665 ygaZ 4247472..4248209 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=291263 A0I22_RS21640 WP_001130215.1 4243093..4243608(+) (luxS) [Escherichia coli strain 2009C-3554]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=291263 A0I22_RS21640 WP_001130215.1 4243093..4243608(+) (luxS) [Escherichia coli strain 2009C-3554]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725