Detailed information NTG0291260

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A0I22_RS21380
• Genome accession: NZ_CP034803
• Coordinates: 4193905..4194897 (+)
• Length: 330 a.a.
• NCBI ID: WP_127891139.1
• Uniprot ID: -
• Organism: Escherichia coli strain 2009C-3554
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4188905..4199897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0I22_RS21350	ispD	4188966..4189676 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A0I22_RS21355	ispF	4189676..4190155 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A0I22_RS21360	truD	4190152..4191201 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
A0I22_RS21365	surE	4191182..4191943 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A0I22_RS21370	pcm	4191937..4192563 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A0I22_RS21375	nlpD	4192748..4193842 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
A0I22_RS21380	rpoS	4193905..4194897 (+)	993	WP_127891139.1	RNA polymerase sigma factor RpoS	Regulator
A0I22_RS21385	-	4195017..4195424 (-)	408	WP_000175365.1	MarR family winged helix-turn-helix transcriptional regulator	-
A0I22_RS21390	-	4195571..4196164 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A0I22_RS21395	-	4196164..4197591 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A0I22_RS21400	-	4197602..4197838 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A0I22_RS21405	pphB	4197879..4198535 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38006.86 Da
• Isoelectric Point: 4.5597

>NTDB_id=291260 A0I22_RS21380 WP_127891139.1 4193905..4194897(+) (rpoS) [Escherichia coli strain 2009C-3554]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDFIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=291260 A0I22_RS21380 WP_127891139.1 4193905..4194897(+) (rpoS) [Escherichia coli strain 2009C-3554]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACTTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712