Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   A0I22_RS16150 Genome accession   NZ_CP034803
Coordinates   3145286..3145876 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 2009C-3554     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3140286..3150876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS16130 ilvN 3141577..3141867 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  A0I22_RS16135 - 3142130..3142783 (+) 654 WP_000168040.1 hypothetical protein -
  A0I22_RS16140 - 3142931..3143413 (+) 483 WP_000229982.1 hypothetical protein -
  A0I22_RS16145 - 3144021..3145124 (+) 1104 WP_001089794.1 hypothetical protein -
  A0I22_RS16150 letA 3145286..3145876 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  A0I22_RS16155 uhpB 3145876..3147378 (+) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  A0I22_RS16160 uhpC 3147388..3148707 (+) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  A0I22_RS16165 uhpT 3148845..3150236 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=291241 A0I22_RS16150 WP_000633668.1 3145286..3145876(+) (letA) [Escherichia coli strain 2009C-3554]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=291241 A0I22_RS16150 WP_000633668.1 3145286..3145876(+) (letA) [Escherichia coli strain 2009C-3554]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment