Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DEH84_RS12895 Genome accession   NZ_CP029210
Coordinates   2882097..2882474 (-) Length   125 a.a.
NCBI ID   WP_109037214.1    Uniprot ID   -
Organism   Aquabacterium olei strain NBRC 110486     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877097..2887474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS12880 (DEH84_12880) - 2878702..2881032 (-) 2331 WP_109037211.1 methyl-accepting chemotaxis protein -
  DEH84_RS12885 (DEH84_12885) - 2881084..2881620 (-) 537 WP_109037212.1 chemotaxis protein CheW -
  DEH84_RS12890 (DEH84_12890) - 2881634..2881999 (-) 366 WP_109037213.1 response regulator -
  DEH84_RS12895 (DEH84_12895) pilG 2882097..2882474 (-) 378 WP_109037214.1 response regulator Regulator
  DEH84_RS12900 (DEH84_12900) - 2882561..2882713 (-) 153 WP_109037215.1 rubredoxin -
  DEH84_RS12905 (DEH84_12905) - 2882843..2883790 (+) 948 WP_109037216.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  DEH84_RS12910 (DEH84_12910) hemL 2883780..2885072 (+) 1293 WP_109037217.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DEH84_RS12915 (DEH84_12915) mpl 2885188..2886564 (+) 1377 WP_109038385.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -
  DEH84_RS12920 (DEH84_12920) ugpQ 2886649..2887464 (-) 816 WP_109037218.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14032.18 Da        Isoelectric Point: 7.8174

>NTDB_id=291241 DEH84_RS12895 WP_109037214.1 2882097..2882474(-) (pilG) [Aquabacterium olei strain NBRC 110486]
MENSVRKVLVIDDSNTIRRSAEIFLKQGGYEVVLAEDGFDALSKVNDHAPDVIFCDILMPRLDGYQTCAIIKRNPRFART
PVIMLSSKDGLFDKARGRMVGSQDYLTKPFTKDQLLQAVSQYMGA

Nucleotide


Download         Length: 378 bp        

>NTDB_id=291241 DEH84_RS12895 WP_109037214.1 2882097..2882474(-) (pilG) [Aquabacterium olei strain NBRC 110486]
ATGGAAAACAGCGTCAGGAAGGTGCTCGTCATCGACGACAGCAACACCATCCGGCGCAGCGCCGAAATCTTCCTGAAGCA
GGGTGGCTATGAGGTCGTGCTGGCCGAAGACGGCTTCGACGCCCTCTCGAAAGTGAACGACCACGCGCCGGATGTCATCT
TCTGCGACATCCTGATGCCGCGGCTCGATGGCTACCAGACGTGCGCCATCATCAAGCGCAATCCGCGTTTTGCCCGCACG
CCCGTGATCATGCTGTCCTCCAAGGATGGCCTGTTCGACAAGGCGCGTGGCCGCATGGTGGGGTCACAGGACTATCTGAC
CAAGCCGTTCACGAAAGACCAGCTGCTGCAGGCCGTCTCCCAGTACATGGGCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.345

95.2

0.584

Multiple sequence alignment