Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DEH84_RS04950 Genome accession   NZ_CP029210
Coordinates   1117803..1119176 (-) Length   457 a.a.
NCBI ID   WP_109035305.1    Uniprot ID   A0A2U8FP60
Organism   Aquabacterium olei strain NBRC 110486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112803..1124176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS04930 (DEH84_04930) - 1113739..1114938 (-) 1200 WP_109035297.1 aspartate aminotransferase family protein -
  DEH84_RS04935 (DEH84_04935) - 1115313..1115657 (+) 345 WP_109035299.1 DUF3579 domain-containing protein -
  DEH84_RS04940 (DEH84_04940) rpsT 1115758..1116051 (-) 294 WP_109035301.1 30S ribosomal protein S20 -
  DEH84_RS04945 (DEH84_04945) murJ 1116215..1117777 (+) 1563 WP_109035303.1 murein biosynthesis integral membrane protein MurJ -
  DEH84_RS04950 (DEH84_04950) radA 1117803..1119176 (-) 1374 WP_109035305.1 DNA repair protein RadA Machinery gene
  DEH84_RS04955 (DEH84_04955) - 1119219..1119746 (-) 528 WP_109035307.1 acyl-CoA thioesterase -
  DEH84_RS04960 (DEH84_04960) alr 1119801..1120922 (-) 1122 WP_109035309.1 alanine racemase -
  DEH84_RS04965 (DEH84_04965) lplT 1121118..1122401 (+) 1284 WP_109035311.1 lysophospholipid transporter LplT -
  DEH84_RS04970 (DEH84_04970) - 1122534..1122950 (+) 417 WP_159098867.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48172.72 Da        Isoelectric Point: 7.3779

>NTDB_id=291233 DEH84_RS04950 WP_109035305.1 1117803..1119176(-) (radA) [Aquabacterium olei strain NBRC 110486]
MAKDKTIYTCSECGGTSPKWLGKCPHCGAWNTLEETRAEPAAGKNRMQALARGLNAAQPVTTLSDIEAADVARTPTGLEE
LDRVLGGGIVAGGVVLIGGDPGIGKSTLLLQALDALSRQMPVLYVTGEESGAQVALRARRLGLDGSKVRVQAEIQLENIV
ATLEAEKPAFCVIDSIQTLFSDQLTSAPGSVAQVRECAAHLTRVAKGSGCTVVLVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSFRLIRAIKNRFGAVNEIGVFAMTDKGLKGVTNPSAIFLSTHSEPVPGSCVLVTLEGTRPMLVEIQALVDSGGP
SPRRLSVGLERDRLAMLLAVLHRHAGMACFDQDVFVNAVGGVRISEPAADLAVLLAIQSSLRARALPKGFIAFGEVGLAG
EVRPAPRGQDRLKEAAKLGFSIAVVPKANAPKKPIEGLTIHAVERVEEAMELVRSLM

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=291233 DEH84_RS04950 WP_109035305.1 1117803..1119176(-) (radA) [Aquabacterium olei strain NBRC 110486]
ATGGCCAAAGACAAGACGATCTACACCTGCTCCGAATGCGGCGGCACGAGCCCGAAGTGGCTGGGCAAATGCCCGCACTG
CGGCGCCTGGAACACGCTGGAAGAGACGCGCGCCGAGCCAGCGGCGGGCAAGAACCGCATGCAGGCGCTGGCCCGCGGGC
TCAATGCCGCCCAGCCCGTGACGACGCTGTCCGACATCGAAGCCGCCGACGTGGCCCGCACGCCCACCGGGCTGGAAGAG
CTGGACCGGGTGCTGGGCGGTGGGATCGTGGCCGGCGGCGTGGTGCTGATCGGCGGGGACCCGGGCATCGGGAAATCGAC
CTTGCTGCTGCAGGCGCTGGATGCCCTGTCGCGCCAGATGCCGGTGCTGTATGTGACCGGCGAGGAAAGCGGCGCCCAGG
TGGCTCTGCGCGCCCGCCGCCTCGGCCTGGATGGCTCAAAAGTGCGCGTGCAGGCCGAGATCCAGCTGGAGAACATCGTC
GCCACGCTGGAGGCTGAAAAGCCCGCCTTCTGCGTCATCGACTCGATCCAGACGCTGTTTTCTGACCAGCTGACCTCCGC
CCCGGGCTCGGTGGCGCAGGTGCGCGAATGTGCTGCCCACCTCACGCGCGTGGCCAAGGGCAGCGGCTGCACCGTGGTGC
TGGTGGGCCACGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGGGTGCTCGAACACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACACGCACAGCAGCTTCCGCCTGATCCGCGCGATCAAGAACCGCTTCGGTGCCGTCAACGAGATCGGCGTGTT
CGCCATGACGGACAAGGGCCTGAAGGGGGTGACCAACCCGAGCGCCATCTTCCTGTCGACCCACAGCGAGCCGGTGCCCG
GCTCGTGCGTGCTGGTGACGCTGGAAGGCACGCGGCCCATGCTGGTCGAGATCCAGGCCCTGGTCGACAGCGGCGGCCCC
AGCCCGCGCCGCCTGAGCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGCGGGCAT
GGCCTGCTTCGATCAGGACGTGTTCGTGAACGCGGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACCTGGCCGTGC
TGCTGGCCATCCAGAGCAGCCTGCGCGCCCGGGCGCTGCCCAAAGGCTTCATCGCCTTTGGCGAAGTGGGCCTGGCCGGC
GAAGTGCGCCCCGCCCCGCGCGGGCAGGACCGGCTGAAGGAAGCCGCCAAGCTGGGCTTCTCGATCGCGGTGGTGCCCAA
GGCCAACGCGCCCAAGAAACCCATCGAGGGGCTGACCATCCACGCGGTGGAACGCGTGGAAGAGGCGATGGAGCTGGTGC
GTTCGCTGATGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FP60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.344

0.481
  radA Streptococcus mitis NCTC 12261

45.455

98.687

0.449
  radA Streptococcus pneumoniae Rx1

46.259

96.499

0.446
  radA Streptococcus pneumoniae D39

46.259

96.499

0.446
  radA Streptococcus pneumoniae R6

46.259

96.499

0.446
  radA Streptococcus pneumoniae TIGR4

46.259

96.499

0.446
  radA Streptococcus mitis SK321

47.196

93.654

0.442

Multiple sequence alignment