Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   DEH83_RS06995 Genome accession   NZ_CP029207
Coordinates   1369781..1372060 (-) Length   759 a.a.
NCBI ID   WP_255776467.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364781..1377060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06960 (DEH83_06975) - 1365427..1365972 (+) 546 WP_255776464.1 class I SAM-dependent methyltransferase -
  DEH83_RS06965 (DEH83_06980) - 1366113..1366974 (+) 862 Protein_1324 IS982 family transposase -
  DEH83_RS06970 (DEH83_06985) - 1367208..1367507 (-) 300 WP_003068181.1 DUF1827 family protein -
  DEH83_RS06975 (DEH83_06990) - 1367572..1368021 (-) 450 WP_003068183.1 NUDIX hydrolase -
  DEH83_RS06980 - 1368178..1368381 (+) 204 WP_003068185.1 YafY family protein -
  DEH83_RS06985 (DEH83_06995) - 1368482..1369069 (+) 588 WP_255776465.1 YafY family protein -
  DEH83_RS06990 (DEH83_07000) - 1369129..1369734 (+) 606 WP_255776466.1 GyrI-like domain-containing protein -
  DEH83_RS06995 (DEH83_07005) clpE 1369781..1372060 (-) 2280 WP_255776467.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DEH83_RS07000 (DEH83_07010) - 1372299..1372529 (+) 231 WP_006267994.1 DUF1797 family protein -
  DEH83_RS07005 (DEH83_07015) - 1372697..1373173 (+) 477 WP_255776468.1 FeoA family protein -
  DEH83_RS07010 (DEH83_07020) feoB 1373170..1375314 (+) 2145 WP_255776469.1 ferrous iron transport protein B -
  DEH83_RS07015 (DEH83_07025) - 1375323..1375457 (+) 135 WP_003023693.1 FeoB-associated Cys-rich membrane protein -
  DEH83_RS07020 (DEH83_07030) - 1375531..1376073 (+) 543 WP_003036027.1 ClbS/DfsB family four-helix bundle protein -

Sequence

Protein


Download         Length: 759 a.a.        Molecular weight: 84726.90 Da        Isoelectric Point: 5.0235

>NTDB_id=291207 DEH83_RS06995 WP_255776467.1 1369781..1372060(-) (clpE) [Streptococcus constellatus strain TCV107]
MLCQNCKINESTIHLYTNVNGKQHQVDLCQNCYQIMKTDPNNALFRGMTNMNNQNNLDPFDDFFSNLGNFQNHQEPQTPP
TQSGGGYGNGGYGSNQGGSTRQQVPQQPKGLLEEFGINVTEFARRGEIDPVIGRDEEIVRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGDVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMNEIRSRQDVILFIDEIHEIVGAGSAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGIQKKYEDYHHVKYTDDAI
EAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKIIDQRLVEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
QNKMADQDTPLISEKTIEHIIEQKTNIPVGDLKEKEQSQLISLADDLKAHVIGQDNAVDKIAKAIRRNRVGLGTPDRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYEEAGQLTERVRRNPYSLILLDEI
EKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEANVGFGAAREGRTNSVIGELGNFFSPEFMNRFD
GIIEFKSLSKENLLQIVDLMLEDVNKRLAVNGIHLDVTDKVKEKLVNLGYDPKMGARPLRRTIQDHIEDAITDYYLEHPS
EKELKAVMTSNSKIVIKSSKKSENETENEIKTTADDTAN

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=291207 DEH83_RS06995 WP_255776467.1 1369781..1372060(-) (clpE) [Streptococcus constellatus strain TCV107]
ATGCTTTGTCAAAATTGTAAAATAAACGAATCAACTATTCACCTTTACACAAATGTGAATGGAAAACAACACCAAGTTGA
CCTCTGTCAAAATTGTTATCAAATCATGAAAACAGACCCAAATAATGCCTTATTTCGTGGCATGACCAATATGAACAATC
AAAATAATTTAGACCCTTTTGATGATTTCTTTAGCAATCTAGGGAATTTTCAAAATCATCAAGAACCGCAGACCCCTCCT
ACTCAATCAGGTGGCGGATACGGTAACGGAGGCTATGGTTCCAATCAAGGTGGCAGCACGCGCCAACAAGTACCACAACA
ACCCAAAGGCCTCCTAGAAGAATTTGGTATCAATGTAACTGAATTTGCTCGGCGGGGCGAGATTGACCCTGTAATTGGTC
GTGACGAAGAAATTGTGCGCGTCATTGAAATCCTCAATCGTAGAACGAAGAACAATCCTGTCCTCATCGGAGAGCCCGGT
GTCGGTAAAACAGCAGTTGTCGAAGGCTTGGCTCAGAAAATTGTAGACGGTGATGTGCCACATAAACTCCAAGGCAAAGA
AGTCATTCGTTTAGATGTCGTTAGTTTGGTTCAAGGAACTGGTATCCGTGGTCAATTTGAAGAACGAATGCAAAAACTCA
TGAACGAAATTCGCTCTCGACAAGATGTTATATTATTCATTGATGAAATTCACGAAATTGTTGGAGCTGGTTCTGCTGGC
GATGGAAATATGGATGCTGGAAACATCCTAAAACCAGCACTTGCTCGCGGTGAACTCCAATTAGTCGGTGCCACAACTCT
CAATGAATACCGGATTATCGAAAAAGATGCTGCACTGGAACGCCGTATGCAGCCTGTAAAAGTTGATGAACCAACAGTTG
AAGAAACGATCACTATCCTCAAAGGTATTCAAAAGAAATACGAAGACTATCACCACGTCAAATACACAGACGATGCCATT
GAAGCAGCAGCTGTCTTGTCCAATCGTTATATCCAAGATCGCTTCTTGCCTGATAAGGCCATTGACTTGCTAGATGAAGC
AGGCTCTAAGATGAATCTGACACTTAACTTTGTCGATCCAAAAATCATTGATCAACGATTGGTAGAAGCTGAAAACCTCA
AGGCACAAGCTACTCGTGATGAGGATTTTGAAAAAGCTGCTTATTTCCGTGACCAAATTGCCAAATACAAAGAAATGCAG
CAAAATAAAATGGCTGATCAAGATACGCCTCTTATCAGTGAAAAAACCATTGAACATATCATTGAGCAAAAGACAAATAT
TCCAGTTGGCGACTTGAAAGAAAAGGAACAATCACAATTGATTAGTCTGGCTGATGATTTGAAAGCTCATGTCATTGGTC
AAGATAATGCTGTTGATAAAATTGCGAAGGCCATTCGCCGTAATCGAGTTGGACTAGGTACACCAGACCGACCAATTGGT
TCTTTCCTTTTTGTTGGGCCAACCGGTGTCGGCAAAACAGAACTTTCTAAACAACTAGCGATTGAGCTCTTTGGTTCAGC
TGACAGCATGATTCGTTTTGATATGAGTGAGTATATGGAAAAACATAGCGTAGCAAAACTCGTCGGAGCGCCTCCAGGTT
ACGTTGGCTACGAAGAAGCTGGACAATTAACAGAACGTGTACGTCGTAATCCTTATTCTCTCATTTTACTTGATGAAATA
GAAAAAGCTCACCCAGATGTCATGCATATGTTCTTACAAGTACTGGATGACGGACGTCTGACAGATGGACAAGGTCGGAC
AGTCAGTTTCAAAGATACGATTATCATTATGACTTCCAACGCCGGTACCGGAAAAGTTGAAGCAAACGTCGGATTTGGTG
CAGCGCGTGAAGGACGAACCAATTCTGTTATCGGTGAATTAGGAAACTTCTTCAGTCCAGAATTTATGAATCGTTTCGAT
GGTATTATTGAGTTCAAATCTCTTAGCAAGGAAAATCTCCTACAAATCGTAGATTTGATGCTTGAAGATGTGAATAAACG
CTTAGCTGTAAATGGTATTCACCTAGACGTAACAGACAAAGTCAAGGAAAAATTAGTTAATCTTGGTTACGATCCAAAAA
TGGGAGCTCGTCCACTTCGTCGGACAATCCAAGATCACATCGAGGATGCTATCACCGACTACTATCTTGAACATCCAAGC
GAAAAAGAGCTCAAAGCTGTCATGACGAGCAATAGCAAGATTGTTATCAAGTCGTCCAAAAAGTCTGAAAACGAGACCGA
AAATGAAATTAAAACAACAGCAGACGACACTGCTAACTGA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(154-273)

AAA domain (Cdc48 subfamily) (AAA_2)

(477-640)

AAA lid domain (AAA_lid_9)

(292-389)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(648-722)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

87.114

98.155

0.855
  clpE Streptococcus pneumoniae D39

87.114

98.155

0.855
  clpE Streptococcus pneumoniae R6

87.114

98.155

0.855
  clpE Streptococcus pneumoniae TIGR4

87.114

98.155

0.855
  clpE Streptococcus mutans UA159

84.453

100

0.845
  clpC Lactococcus lactis subsp. cremoris KW2

76.984

99.605

0.767
  clpC Bacillus subtilis subsp. subtilis str. 168

50

91.963

0.46
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.393

85.903

0.407
  clpC Streptococcus pneumoniae Rx1

48.392

81.95

0.397
  clpC Streptococcus pneumoniae D39

48.392

81.95

0.397
  clpC Streptococcus pneumoniae TIGR4

48.232

81.95

0.395
  clpC Streptococcus thermophilus LMD-9

47.191

82.082

0.387
  clpC Streptococcus thermophilus LMG 18311

47.115

82.213

0.387
  clpC Streptococcus mutans UA159

46.955

82.213

0.386

Multiple sequence alignment