Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A0I22_RS06675 Genome accession   NZ_CP034803
Coordinates   1132633..1133262 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 2009C-3554     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127633..1138262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS06660 helD 1127875..1129929 (-) 2055 WP_001301436.1 DNA helicase IV -
  A0I22_RS06665 yccF 1130052..1130498 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A0I22_RS06670 yccS 1130508..1132670 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A0I22_RS06675 sxy/tfoX 1132633..1133262 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A0I22_RS06680 sulA 1133481..1133990 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A0I22_RS06685 ompA 1134347..1135387 (+) 1041 WP_000750416.1 porin OmpA -
  A0I22_RS06690 matP 1135463..1135915 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A0I22_RS06695 ycbZ 1136101..1137861 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=291207 A0I22_RS06675 WP_000839159.1 1132633..1133262(-) (sxy/tfoX) [Escherichia coli strain 2009C-3554]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=291207 A0I22_RS06675 WP_000839159.1 1132633..1133262(-) (sxy/tfoX) [Escherichia coli strain 2009C-3554]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment