Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DEH83_RS06380 Genome accession   NZ_CP029207
Coordinates   1263653..1265413 (+) Length   586 a.a.
NCBI ID   WP_255776426.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1258653..1270413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06360 (DEH83_06370) - 1259411..1259821 (+) 411 WP_255776423.1 peptide deformylase -
  DEH83_RS06365 (DEH83_06375) - 1260088..1261275 (+) 1188 WP_255776424.1 NADH-dependent flavin oxidoreductase -
  DEH83_RS06370 (DEH83_06380) - 1261446..1261904 (+) 459 WP_006270314.1 MarR family winged helix-turn-helix transcriptional regulator -
  DEH83_RS06375 (DEH83_06385) rcrP 1261897..1263663 (+) 1767 WP_255776425.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06380 (DEH83_06390) rcrQ 1263653..1265413 (+) 1761 WP_255776426.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06385 (DEH83_06395) - 1265623..1265937 (+) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  DEH83_RS06390 (DEH83_06400) - 1265948..1266268 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  DEH83_RS06395 (DEH83_06405) - 1266402..1267799 (-) 1398 WP_255776427.1 glycoside hydrolase family 1 protein -
  DEH83_RS06400 (DEH83_06410) celB 1267943..1269211 (+) 1269 WP_255776428.1 PTS cellobiose transporter subunit IIC -
  DEH83_RS06405 (DEH83_06415) - 1269245..1269970 (+) 726 WP_003070533.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65179.35 Da        Isoelectric Point: 6.6021

>NTDB_id=291204 DEH83_RS06380 WP_255776426.1 1263653..1265413(+) (rcrQ) [Streptococcus constellatus strain TCV107]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGAMLSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFKMLNTNLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRIFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDNVFFGYNSDRTIIYDFSAKAKAGQKIAIVGSTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAAAKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRNGNIIEQGN
HDQLMEENGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=291204 DEH83_RS06380 WP_255776426.1 1263653..1265413(+) (rcrQ) [Streptococcus constellatus strain TCV107]
ATGGAAAATAAAAAATCATCTTTATTTAGTCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCGTTGCATT
TGTGGGAGCAATGCTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCGATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGCCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGCACAGTGATTTCATCAAGTTTGCTTCTTATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGCGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTATAATGCTACCGAGGAATCAAAAAAAGCCTTTAAAATGCTTAATACGAATCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGATTT
TTTCTCAACCCTTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAGGCTAGTGCTGCTATGGGGCGTGTATTTGAA
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACTTTTGA
TAATGTATTCTTTGGCTACAATTCGGATCGAACAATTATTTATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTTCGACTGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACTATTGATGGTGTTGATACCAAGCAAATGAAACGTTCTGAGGTACACGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGACGAAGCAGTTGTGGCAGCTG
CCAAAGCTGTTGGGGTTCATCACTTCATCAAGACTTTGCCAAAAGGATACGATACGGTGCTGGACGATACAGTAAGTCTT
TCTGTGGGGCAAAAGCAATTGCTGACCATTGCGCGTGCCCTTCTTAAAGATGCTCCGTTGCTTATCTTGGACGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATTCAAAAAGCGATGGATAAACTAATGGAAGGACGAACTTCCTTTGTCA
TTGCTCACCGTTTGTCAACAATTCGTAATGCTGATTTGATTTTGGTCATGCGTAATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGACGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(362-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.962

99.317

0.705

Multiple sequence alignment