Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DEH83_RS06375 Genome accession   NZ_CP029207
Coordinates   1261897..1263663 (+) Length   588 a.a.
NCBI ID   WP_255776425.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256897..1268663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06355 (DEH83_06365) scrK 1258446..1259345 (+) 900 WP_255776422.1 fructokinase ScrK -
  DEH83_RS06360 (DEH83_06370) - 1259411..1259821 (+) 411 WP_255776423.1 peptide deformylase -
  DEH83_RS06365 (DEH83_06375) - 1260088..1261275 (+) 1188 WP_255776424.1 NADH-dependent flavin oxidoreductase -
  DEH83_RS06370 (DEH83_06380) - 1261446..1261904 (+) 459 WP_006270314.1 MarR family winged helix-turn-helix transcriptional regulator -
  DEH83_RS06375 (DEH83_06385) rcrP 1261897..1263663 (+) 1767 WP_255776425.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06380 (DEH83_06390) rcrQ 1263653..1265413 (+) 1761 WP_255776426.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06385 (DEH83_06395) - 1265623..1265937 (+) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  DEH83_RS06390 (DEH83_06400) - 1265948..1266268 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  DEH83_RS06395 (DEH83_06405) - 1266402..1267799 (-) 1398 WP_255776427.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65274.08 Da        Isoelectric Point: 6.9918

>NTDB_id=291203 DEH83_RS06375 WP_255776425.1 1261897..1263663(+) (rcrP) [Streptococcus constellatus strain TCV107]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTKETVVSDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGIRVVRAYNAEDYQDDKFAGANDEVTRLNLFVSRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALPGRLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQPKTAKDVKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=291203 DEH83_RS06375 WP_255776425.1 1261897..1263663(+) (rcrP) [Streptococcus constellatus strain TCV107]
ATGGTTAAATTGTTTAAACGTTTAACTGTCAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTATTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGAAACAGTCGTTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATTATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGGTTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGATTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAGGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAGTCGGCTCATGGCTATT
TTAAATCCAATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTACCAGGACGTTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCTTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGACGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAACCCAAAACAGCTAAAGATGTCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCTGTCATTGAACATGTTAGCTTTACAGCTAAAGCGGGCGAAACGGTAGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGATTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTCGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGCTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATCG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAAGTTGTTGGGCAAGGAACT
CACAAAGAGCTGCTAGCGACAAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.5

100

0.719

Multiple sequence alignment