Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DEH83_RS05490 Genome accession   NZ_CP029207
Coordinates   1066074..1067435 (+) Length   453 a.a.
NCBI ID   WP_255777233.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061074..1072435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS05460 (DEH83_05450) galU 1061547..1062446 (-) 900 WP_037598195.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DEH83_RS05465 (DEH83_05455) - 1062474..1063490 (-) 1017 WP_003036582.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DEH83_RS05470 - 1063575..1063754 (+) 180 Protein_1039 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DEH83_RS05475 (DEH83_05460) - 1063973..1065007 (+) 1035 WP_255776361.1 S66 peptidase family protein -
  DEH83_RS05480 (DEH83_05465) - 1065101..1065544 (+) 444 WP_048800643.1 dUTP diphosphatase -
  DEH83_RS05485 (DEH83_05470) - 1065546..1066061 (+) 516 WP_115263533.1 histidine phosphatase family protein -
  DEH83_RS05490 (DEH83_05475) radA 1066074..1067435 (+) 1362 WP_255777233.1 DNA repair protein RadA Machinery gene
  DEH83_RS05495 (DEH83_05480) gltX 1067673..1069130 (+) 1458 WP_003070814.1 glutamate--tRNA ligase -
  DEH83_RS05500 (DEH83_05485) - 1069586..1070113 (+) 528 WP_048800644.1 5-formyltetrahydrofolate cyclo-ligase -
  DEH83_RS05505 (DEH83_05490) - 1070106..1070786 (+) 681 WP_195405114.1 rhomboid family intramembrane serine protease -
  DEH83_RS05510 (DEH83_05495) - 1070844..1071680 (-) 837 WP_255776362.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49640.90 Da        Isoelectric Point: 5.6008

>NTDB_id=291185 DEH83_RS05490 WP_255777233.1 1066074..1067435(+) (radA) [Streptococcus constellatus strain TCV107]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQQGTVLYVSGEESAEQIKLRAERLGDTDSEFYLYAETNMQNIRTEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTAGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIR
RVNRIEQRINEAVKLGFTKIYVPKNSLNGLNIPEKTEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=291185 DEH83_RS05490 WP_255777233.1 1066074..1067435(+) (radA) [Streptococcus constellatus strain TCV107]
ATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATACCATTCGCCCAAGTACCTAGGTCGCTGTCCAAACTG
CGGCTCTTGGTCTTCTTTTGTTGAGGAAGTGGAGGCTGCTGAGGTCAAGCATGCCCGTGTGTCCTTGACGGGTGAAAAGA
CTCGGCCCATGAAGTTGGCTGAGGTCACTTCGATTGACGTCAATCGGACTAAGACGGAAATGGACGAGTTCAATCGTGTG
CTGGGTGGTGGCGTAGTGCCCGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCTTCTGCA
GGTTTCCACTCAGCTTTCCCAACAGGGTACCGTCTTATATGTCAGCGGAGAGGAATCAGCTGAGCAGATTAAGCTGCGGG
CGGAGCGCCTCGGTGATACTGATAGTGAATTTTATCTCTACGCCGAAACCAATATGCAAAATATCCGCACAGAGATTGAG
AAAATCAAGCCAGATTTTCTGATTATCGACTCTATTCAGACGGTGATGTCACCAGAAATTTCTAGTGTTCAAGGCTCTGT
TTCTCAGGTCCGCGAGGTGACAGCCGAGCTCATGCAACTGGCCAAGACCAATAATATTGCGACCTTTATCGTTGGCCACA
TGACCAAGGAAGGAACCTTAGCTGGTCCCCGAACATTGGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGCGAACGC
CAGCACACTTTCCGTATTTTACGGGCAGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGCATTTTTGAAATGCAATC
TGGAGGGCTAGTTGAGGTTATCAACCCCAGTGAAGTCTTTCTGGAAGAACGGCTGGATGGTGCGACAGGCTCTTCCATCG
TCGTGACCATGGAAGGAACGCGGCCGATTTTGGCGGAAGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAATGCCAAG
CGGACAACGGCAGGTCTGGACTTCAATCGTGCCAGCCTGATTATGGCTGTTTTGGAGAAACGAGCTGGTTTGCTTCTGCA
AAATCAAGATGCTTATCTCAAATCAGCTGGTGGTGTGCGCTTAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCA
TTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAATGTTATATTGGCGAAATTGGTCTGACAGGCGAAATCCGC
CGTGTCAATCGCATTGAGCAGCGCATCAACGAAGCTGTTAAGTTAGGCTTCACAAAAATTTATGTTCCTAAAAACTCTTT
GAACGGATTGAATATTCCCGAAAAGACTGAAGTTATTGGTGTGACAACGATTGGTGAAGTATTGAAGAAGGTGTTTGGGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.949

100

0.909
  radA Streptococcus pneumoniae D39

90.728

100

0.907
  radA Streptococcus pneumoniae R6

90.728

100

0.907
  radA Streptococcus pneumoniae Rx1

90.728

100

0.907
  radA Streptococcus mitis SK321

90.728

100

0.907
  radA Streptococcus pneumoniae TIGR4

90.728

100

0.907
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

100

0.618

Multiple sequence alignment