Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DEH83_RS01905 Genome accession   NZ_CP029207
Coordinates   391384..392097 (+) Length   237 a.a.
NCBI ID   WP_255776929.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 386384..397097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS01895 (DEH83_01870) treC 387384..389015 (-) 1632 WP_255776927.1 alpha,alpha-phosphotrehalase -
  DEH83_RS01900 (DEH83_01875) treP 389196..391208 (-) 2013 WP_255776928.1 PTS system trehalose-specific EIIBC component -
  DEH83_RS01905 (DEH83_01880) treR 391384..392097 (+) 714 WP_255776929.1 trehalose operon repressor Regulator
  DEH83_RS01910 (DEH83_01885) - 392152..393492 (-) 1341 WP_255776930.1 hemolysin family protein -
  DEH83_RS01915 (DEH83_01890) - 393606..395252 (-) 1647 WP_255776931.1 phosphoenolpyruvate carboxykinase (ATP) -
  DEH83_RS01920 (DEH83_01895) - 395499..396623 (-) 1125 WP_037597649.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27734.81 Da        Isoelectric Point: 9.2438

>NTDB_id=291159 DEH83_RS01905 WP_255776929.1 391384..392097(+) (treR) [Streptococcus constellatus strain TCV107]
MKKYEQIFKFIEQDILNEKYQVNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKLKGQGSKVTKQEQLDFPVSNLT
SYQELVQQHGINSKTNVIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVVSVLDIDYLDKSLVPSMTREIAEQSIY
AYLEGKLGLHIAYAQKEITIDLATNRDKILMDIENDQHVVSVKSKVYLTDGQQFQFTDSRHKLEKFRFIDFAKRQKS

Nucleotide


Download         Length: 714 bp        

>NTDB_id=291159 DEH83_RS01905 WP_255776929.1 391384..392097(+) (treR) [Streptococcus constellatus strain TCV107]
ATGAAGAAATATGAACAAATTTTTAAATTCATAGAACAAGATATTCTAAATGAAAAATATCAAGTTAATGATTATCTCCC
TAGCGAGCATGAACTCGTCCAAACCTACAAAGTCAGCCGTGATACCATTCGCAAGTCACTTGATTTACTTCAAAAAGCTG
GTCTTATCCAAAAACTGAAAGGGCAGGGCTCTAAAGTTACTAAACAAGAACAGCTTGACTTTCCTGTCTCCAATCTGACT
AGTTACCAAGAACTCGTGCAACAGCATGGGATAAATTCTAAAACAAATGTCATTCAGTTAGAAAAAATCACGGTTGATAA
AAAGTTATCCAATCTCACAGGCTTTCCTGAATACCGTCTGGTATGGCGAATTGTCCGCCAGAGAGTTGTAGATGACGTCG
TTTCCGTCTTAGATATTGATTACCTTGATAAGAGCCTTGTCCCTTCCATGACTCGAGAAATAGCAGAACAATCGATTTAT
GCTTATCTAGAAGGAAAACTAGGGCTGCACATTGCTTATGCCCAAAAAGAAATCACAATTGATCTAGCTACAAACCGCGA
TAAAATTTTGATGGACATTGAAAATGATCAACATGTCGTTTCTGTTAAGTCCAAAGTCTATCTTACAGATGGACAGCAAT
TTCAATTCACAGATAGTCGCCATAAACTGGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAAAGCTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.407

99.578

0.641

Multiple sequence alignment