Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AYR10_RS03765 Genome accession   NZ_CP034801
Coordinates   772438..773043 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2010C-3142     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767438..778043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR10_RS03745 aes 767579..768538 (+) 960 WP_000801803.1 acetyl esterase -
  AYR10_RS03750 hemH 768535..769497 (-) 963 WP_001250105.1 ferrochelatase -
  AYR10_RS03755 adk 769629..770273 (-) 645 WP_001220233.1 adenylate kinase -
  AYR10_RS03760 htpG 770454..772328 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  AYR10_RS03765 recR 772438..773043 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AYR10_RS03770 ybaB 773043..773372 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AYR10_RS03775 dnaX 773425..775356 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  AYR10_RS03780 apt 775485..776036 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  AYR10_RS03785 ybaN 776189..776566 (-) 378 WP_001188898.1 DUF454 family protein -
  AYR10_RS03790 priC 776636..777163 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  AYR10_RS03795 rsmS 777177..777341 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=291129 AYR10_RS03765 WP_001195025.1 772438..773043(-) (recR) [Escherichia coli strain 2010C-3142]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=291129 AYR10_RS03765 WP_001195025.1 772438..773043(-) (recR) [Escherichia coli strain 2010C-3142]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACACTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443