Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYR10_RS01030 Genome accession   NZ_CP034801
Coordinates   182336..182965 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 2010C-3142     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 177336..187965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR10_RS01015 helD 177578..179632 (-) 2055 WP_001301436.1 DNA helicase IV -
  AYR10_RS01020 yccF 179755..180201 (+) 447 WP_001261230.1 YccF domain-containing protein -
  AYR10_RS01025 yccS 180211..182373 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AYR10_RS01030 sxy/tfoX 182336..182965 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AYR10_RS01035 sulA 183184..183693 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AYR10_RS01040 ompA 184050..185090 (+) 1041 WP_000750416.1 porin OmpA -
  AYR10_RS01045 matP 185165..185617 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AYR10_RS01050 ycbZ 185803..187563 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=291122 AYR10_RS01030 WP_000839159.1 182336..182965(-) (sxy/tfoX) [Escherichia coli strain 2010C-3142]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=291122 AYR10_RS01030 WP_000839159.1 182336..182965(-) (sxy/tfoX) [Escherichia coli strain 2010C-3142]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995