Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DEO29_RS00220 | Genome accession | NZ_CP029205 |
| Coordinates | 30332..30820 (+) | Length | 162 a.a. |
| NCBI ID | WP_044006063.1 | Uniprot ID | Q8K933 |
| Organism | Buchnera aphidicola (Schizaphis graminum) isolate LNK | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 25332..35820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEO29_RS00200 (DEO29_00200) | - | 25801..26490 (-) | 690 | WP_011054038.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| DEO29_RS00205 (DEO29_00205) | ruvX | 26522..26935 (-) | 414 | WP_044006098.1 | Holliday junction resolvase RuvX | - |
| DEO29_RS00210 (DEO29_00210) | gshB | 26946..27908 (-) | 963 | WP_011054036.1 | glutathione synthase | - |
| DEO29_RS00215 (DEO29_00215) | dnaB | 28071..29468 (-) | 1398 | WP_011054035.1 | replicative DNA helicase | - |
| DEO29_RS00220 (DEO29_00220) | ssb | 30332..30820 (+) | 489 | WP_044006063.1 | single-stranded DNA-binding protein | Machinery gene |
| DEO29_RS00225 (DEO29_00225) | - | 30872..31270 (-) | 399 | WP_050702900.1 | hypothetical protein | - |
| DEO29_RS00230 (DEO29_00230) | - | 31230..31640 (-) | 411 | WP_050702899.1 | alpha/beta fold hydrolase | - |
| DEO29_RS00235 (DEO29_00235) | - | 31773..32351 (+) | 579 | WP_011054033.1 | NfuA family Fe-S biogenesis protein | - |
| DEO29_RS00240 (DEO29_00240) | ansA | 32401..33414 (-) | 1014 | WP_108926787.1 | asparaginase | - |
| DEO29_RS00245 (DEO29_00245) | - | 33653..35242 (+) | 1590 | WP_011054032.1 | peptide chain release factor 3 | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 18391.71 Da Isoelectric Point: 6.7349
>NTDB_id=291121 DEO29_RS00220 WP_044006063.1 30332..30820(+) (ssb) [Buchnera aphidicola (Schizaphis graminum) isolate LNK]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKIEKIDSSEIDFDDEI
PF
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKIEKIDSSEIDFDDEI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=291121 DEO29_RS00220 WP_044006063.1 30332..30820(+) (ssb) [Buchnera aphidicola (Schizaphis graminum) isolate LNK]
ATGGCAAGTAGAGGTGTAAATAAAGTAATATTAATTGGTCATTTGGGTCAAGATCCTGAAGTTCGTTACATGCCGAACGG
TAACGCAGTAGTAAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGTGAAAACAAAGAGAAAACAG
AATGGCATAGAATAGTATTATTTGGAAAATTAGCCGAAATTGCTGGAGAATATTTAAGAAAAGGTTCTCAAGTTTATATT
GAAGGATCTCTTCAAACTAGAAAATGGCAAGACCAAAATGGTCTTGAACGTTATACAACAGAAGTTATAGTTAACATTGG
CGGTACGATGCAAATGTTAGGAAATCGTAATTCAAATTCTCATAATGTCACATTAAATGAAAATAATAATATTGTAAAAA
CAAAAAAAATAGAAATAAATAATTCTCCTAAAAAAATAGAAAAAATTGATTCTTCAGAAATAGATTTTGATGATGAAATT
CCTTTTTAG
ATGGCAAGTAGAGGTGTAAATAAAGTAATATTAATTGGTCATTTGGGTCAAGATCCTGAAGTTCGTTACATGCCGAACGG
TAACGCAGTAGTAAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGTGAAAACAAAGAGAAAACAG
AATGGCATAGAATAGTATTATTTGGAAAATTAGCCGAAATTGCTGGAGAATATTTAAGAAAAGGTTCTCAAGTTTATATT
GAAGGATCTCTTCAAACTAGAAAATGGCAAGACCAAAATGGTCTTGAACGTTATACAACAGAAGTTATAGTTAACATTGG
CGGTACGATGCAAATGTTAGGAAATCGTAATTCAAATTCTCATAATGTCACATTAAATGAAAATAATAATATTGTAAAAA
CAAAAAAAATAGAAATAAATAATTCTCCTAAAAAAATAGAAAAAATTGATTCTTCAGAAATAGATTTTGATGATGAAATT
CCTTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.627 |
100 |
0.63 |
| ssb | Glaesserella parasuis strain SC1401 |
45.304 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
43.182 |
100 |
0.469 |
| ssb | Neisseria meningitidis MC58 |
43.182 |
100 |
0.469 |