Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EC55989_RS02465 Genome accession   NC_011748
Coordinates   521716..522321 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli 55989     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 516716..527321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC55989_RS29850 - 517270..517368 (+) 99 Protein_470 hypothetical protein -
  EC55989_RS02435 (EC55989_0479) rsmS 517421..517582 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EC55989_RS02440 (EC55989_0480) priC 517596..518123 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  EC55989_RS02445 (EC55989_0481) ybaN 518193..518570 (+) 378 WP_001188905.1 DUF454 family protein -
  EC55989_RS02450 (EC55989_0482) apt 518723..519274 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EC55989_RS02455 (EC55989_0483) dnaX 519403..521334 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EC55989_RS02460 (EC55989_0484) ybaB 521387..521716 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EC55989_RS02465 (EC55989_0485) recR 521716..522321 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EC55989_RS02470 (EC55989_0486) htpG 522431..524305 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EC55989_RS02475 (EC55989_0487) adk 524486..525130 (+) 645 WP_001220233.1 adenylate kinase -
  EC55989_RS02480 (EC55989_0488) hemH 525366..526328 (+) 963 WP_001250088.1 ferrochelatase -
  EC55989_RS02485 (EC55989_0489) aes 526325..527284 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=29112 EC55989_RS02465 WP_001195025.1 521716..522321(+) (recR) [Escherichia coli 55989]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=29112 EC55989_RS02465 WP_001195025.1 521716..522321(+) (recR) [Escherichia coli 55989]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443