Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A0I37_RS15850 Genome accession   NZ_CP034799
Coordinates   3274324..3274839 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 2009C-4687     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269324..3279839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I37_RS15805 csrA 3270141..3270326 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A0I37_RS15835 yqaB 3271554..3272120 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A0I37_RS15840 yqaA 3272117..3272545 (+) 429 WP_001287450.1 YqaA family protein -
  A0I37_RS15845 gshA 3272618..3274174 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  A0I37_RS15850 luxS 3274324..3274839 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  A0I37_RS15855 emrB 3274903..3276441 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A0I37_RS15860 emrA 3276458..3277630 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A0I37_RS15865 emrR 3277757..3278287 (-) 531 WP_000378437.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A0I37_RS15870 ygaH 3278378..3278713 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  A0I37_RS15875 ygaZ 3278703..3279440 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=291099 A0I37_RS15850 WP_001130215.1 3274324..3274839(+) (luxS) [Escherichia coli strain 2009C-4687]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=291099 A0I37_RS15850 WP_001130215.1 3274324..3274839(+) (luxS) [Escherichia coli strain 2009C-4687]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725