Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A0I37_RS10810 Genome accession   NZ_CP034799
Coordinates   2256616..2257284 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 2009C-4687     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251616..2262284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I37_RS10780 yicC 2251635..2252498 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  A0I37_RS10785 rph 2252625..2253341 (+) 717 WP_001247093.1 ribonuclease PH -
  A0I37_RS10790 pyrE 2253407..2254048 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  A0I37_RS10795 slmA 2254085..2254681 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A0I37_RS10800 dut 2254788..2255246 (-) 459 WP_000976070.1 dUTP diphosphatase -
  A0I37_RS10805 coaBC 2255224..2256444 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A0I37_RS10810 radC 2256616..2257284 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A0I37_RS10815 rpmB 2257501..2257737 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  A0I37_RS10820 rpmG 2257758..2257925 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  A0I37_RS10825 mutM 2258023..2258832 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A0I37_RS10830 coaD 2258871..2259350 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A0I37_RS10835 waaA 2259358..2260635 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A0I37_RS10840 rfaQ 2261048..2262106 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=291079 A0I37_RS10810 WP_001297375.1 2256616..2257284(+) (radC) [Escherichia coli strain 2009C-4687]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=291079 A0I37_RS10810 WP_001297375.1 2256616..2257284(+) (radC) [Escherichia coli strain 2009C-4687]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496