Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYN49_RS05095 Genome accession   NZ_CP029187
Coordinates   1268092..1269450 (-) Length   452 a.a.
NCBI ID   WP_108903116.1    Uniprot ID   A0A2S1SG47
Organism   Flavobacterium pallidum strain HYN0049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1263092..1274450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN49_RS05080 (HYN49_05080) - 1263540..1265372 (+) 1833 WP_108904961.1 histidine kinase -
  HYN49_RS05085 (HYN49_05085) - 1265369..1266118 (+) 750 WP_108903114.1 LytTR family DNA-binding domain-containing protein -
  HYN49_RS05090 (HYN49_05090) - 1266115..1268079 (-) 1965 WP_108903115.1 transglycosylase domain-containing protein -
  HYN49_RS05095 (HYN49_05095) radA 1268092..1269450 (-) 1359 WP_108903116.1 DNA repair protein RadA Machinery gene
  HYN49_RS05100 (HYN49_05100) - 1269450..1270598 (-) 1149 WP_108903117.1 alpha/beta hydrolase -
  HYN49_RS05105 (HYN49_05105) - 1270655..1271617 (-) 963 WP_108903118.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HYN49_RS05110 (HYN49_05110) panD 1271622..1271972 (-) 351 WP_108370050.1 aspartate 1-decarboxylase -
  HYN49_RS05115 (HYN49_05115) panC 1271986..1272834 (-) 849 WP_108903119.1 pantoate--beta-alanine ligase -
  HYN49_RS05120 (HYN49_05120) - 1272941..1273747 (+) 807 WP_108904962.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49947.59 Da        Isoelectric Point: 6.5070

>NTDB_id=291044 HYN49_RS05095 WP_108903116.1 1268092..1269450(-) (radA) [Flavobacterium pallidum strain HYN0049]
MSKIKTAFFCQHCGTQYPKWQGQCNSCKQWNTIVEEVIQKEDKTSWKPSAENKKAAKPLKIEEIDSAQEIRMDSLDGELN
RVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERITDKANNCYILTETKTQHIFHQIR
EIEPEVVIIDSIQTLHTDYIEASPGSISQIRECTAELIKFAKETNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEGDR
NHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISPKSEELSGTAIASTMEGMRPLMIEIQALVSTAVYGTPQ
RSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPVGKDFCFAAEVGLSGEIR
PVNRIEQRIQEAEKLGFSSIFVSKHNKIPIKDFGIKVMMVGRIEEVAGELFG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=291044 HYN49_RS05095 WP_108903116.1 1268092..1269450(-) (radA) [Flavobacterium pallidum strain HYN0049]
ATGTCAAAAATAAAGACGGCCTTCTTTTGCCAGCATTGCGGAACCCAATATCCGAAATGGCAGGGCCAGTGCAATTCCTG
CAAACAATGGAATACGATTGTCGAAGAGGTGATACAGAAGGAAGACAAGACTTCCTGGAAACCTTCGGCAGAAAATAAAA
AAGCAGCAAAGCCCCTTAAGATTGAAGAAATCGACTCGGCGCAGGAAATCCGTATGGACAGCCTTGACGGCGAACTGAAC
CGTGTACTCGGCGGCGGGATTGTTCCCGGCTCCCTGATTTTATTGGGCGGCGAACCTGGAATCGGGAAAAGTACGTTGCT
GCTGCAGATTTCGCTCAAACTCCCGTATCGCACCTTGTATGTTTCGGGCGAGGAAAGTCAGAAGCAGATAAAAATGCGTG
CCGAAAGGATTACCGACAAAGCCAACAACTGCTACATTTTAACCGAGACCAAAACACAGCACATTTTCCACCAGATCCGG
GAAATTGAGCCTGAAGTCGTCATTATCGATTCGATACAAACACTTCATACAGATTACATCGAGGCTTCACCGGGAAGCAT
TTCGCAAATCCGGGAATGCACTGCCGAGCTGATCAAATTTGCCAAAGAAACCAATGTGCCCGTCATCCTCATCGGGCATA
TCACGAAAGACGGCAGCATTGCCGGCCCGAAAATCCTGGAACACATGGTCGATACAGTGCTGCAATTCGAAGGCGACAGG
AACCACGTGTACCGCATACTACGGTCGCTGAAAAACCGTTTTGGTTCTACCGCCGAATTGGGCATTTACGAAATGCAGGG
CAGCGGGCTACGGGAAGTTTCTAATCCGTCGGAAATATTGATTTCACCCAAAAGCGAGGAATTATCCGGCACCGCAATCG
CCTCCACCATGGAAGGCATGCGCCCGCTGATGATTGAAATCCAGGCGCTGGTAAGCACCGCCGTTTATGGTACGCCGCAG
AGGAGCACGACAGGTTATAATGCCAAAAGGCTGAACATGATTTTGGCCGTTTTGGAAAAACGCGCAGGCTTCCGCCTCGG
GACAAAAGACGTTTTCCTGAACATTACAGGCGGAATCACGGTCGATGATCCGGCGATTGATTTGGCGGTCGTCGCAGCGA
TCCTTTCCTCAAACGAGGATATTCCGGTGGGAAAAGATTTCTGTTTTGCCGCTGAAGTGGGGCTTTCCGGGGAAATACGT
CCCGTAAATCGTATCGAACAACGCATCCAGGAAGCGGAAAAACTCGGATTTTCGAGTATTTTTGTATCTAAGCACAACAA
GATCCCAATCAAGGATTTCGGCATTAAAGTGATGATGGTGGGCAGGATCGAAGAAGTGGCCGGCGAATTGTTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(314-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1SG47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

49.891

100

0.504
  radA Streptococcus mitis SK321

49.89

100

0.502
  radA Streptococcus pneumoniae Rx1

49.89

100

0.502
  radA Streptococcus pneumoniae TIGR4

49.89

100

0.502
  radA Streptococcus pneumoniae D39

49.89

100

0.502
  radA Streptococcus pneumoniae R6

49.89

100

0.502
  radA Bacillus subtilis subsp. subtilis str. 168

49.127

100

0.498

Multiple sequence alignment