Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYN59_RS05535 Genome accession   NZ_CP029186
Coordinates   1239678..1241039 (-) Length   453 a.a.
NCBI ID   WP_108777317.1    Uniprot ID   A0A2S1QWK4
Organism   Flavobacterium album strain HYN0059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234678..1246039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN59_RS05525 (HYN59_05525) - 1235648..1237489 (-) 1842 WP_108777315.1 DUF4139 domain-containing protein -
  HYN59_RS05530 (HYN59_05530) - 1237672..1239663 (-) 1992 WP_108777316.1 transglycosylase domain-containing protein -
  HYN59_RS05535 (HYN59_05535) radA 1239678..1241039 (-) 1362 WP_108777317.1 DNA repair protein RadA Machinery gene
  HYN59_RS05540 (HYN59_05540) - 1241039..1242178 (-) 1140 WP_108777318.1 alpha/beta hydrolase-fold protein -
  HYN59_RS05545 (HYN59_05545) - 1242219..1243106 (-) 888 WP_245895672.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HYN59_RS05550 (HYN59_05550) panD 1243181..1243531 (-) 351 WP_108777320.1 aspartate 1-decarboxylase -
  HYN59_RS05555 (HYN59_05555) panC 1243545..1244390 (-) 846 WP_108777321.1 pantoate--beta-alanine ligase -
  HYN59_RS05560 (HYN59_05560) - 1244497..1245303 (+) 807 WP_108777322.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49676.05 Da        Isoelectric Point: 6.2722

>NTDB_id=291033 HYN59_RS05535 WP_108777317.1 1239678..1241039(-) (radA) [Flavobacterium album strain HYN0059]
MSKLKTSFFCQNCGTQYSKWQGQCNACKQWNTIVEEVIQKEEKQAWKPASADTKKAARPLKINEIDAGGEIRLDTGDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERITPSAENCYILTETKTQNIFRQI
GDIDPEVVIIDSIQTLHSDYIESSAGSISQIRETTAELIKFAKETNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVANPSEILISHKDEEMSGTAIATTMEGMRPLMVEIQALVSSAVYGTP
QRSTTGYNAKRLNMVLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDIPVSKDFCFAGEIGLSGEI
RPVNRVDQRILEAEKLGFSTIFVSKYNKISLKNTLIDIRLVAKIEDVASHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=291033 HYN59_RS05535 WP_108777317.1 1239678..1241039(-) (radA) [Flavobacterium album strain HYN0059]
ATGTCTAAACTCAAAACTTCCTTTTTTTGCCAGAATTGCGGTACACAATATTCGAAATGGCAGGGACAATGCAATGCCTG
TAAGCAATGGAATACCATTGTGGAAGAGGTAATACAAAAAGAAGAAAAACAGGCGTGGAAGCCCGCTTCGGCCGACACCA
AAAAAGCGGCGCGCCCTTTAAAGATTAATGAAATAGATGCGGGCGGCGAGATACGCCTTGACACCGGTGACGGCGAGCTG
AACCGTGTATTGGGTGGCGGCCTGGTGCCGGGATCGCTCACGCTGCTTGGCGGCGAGCCTGGGATCGGGAAGAGTACGCT
ATTGCTCCAGATCTCCCTAAAGCTGCCCTACCGCACCCTTTACGTATCGGGCGAGGAGAGCCAGAAGCAGATAAAGATGC
GCGCCGAAAGGATAACACCATCGGCAGAGAACTGCTACATCCTTACCGAAACGAAAACACAGAATATTTTCAGGCAGATC
GGGGATATCGACCCTGAGGTTGTTATCATCGACTCAATACAGACACTGCATTCGGACTACATTGAATCGTCGGCAGGTAG
CATTTCGCAGATACGCGAAACCACCGCCGAACTGATAAAATTTGCCAAAGAAACCAACGTGCCTGTAATACTGATAGGCC
ACATTACCAAAGACGGCAGCATAGCCGGGCCAAAGATACTGGAACACATGGTAGATACCGTGCTACAGTTTGAAGGCGAC
CGCAACCACGTATACCGCATTCTCCGTTCGCTCAAAAACCGCTTTGGCTCTACTGCCGAACTGGGCATTTATGAAATGCT
GGGCAGCGGATTGCGGGAAGTAGCCAACCCATCGGAAATACTTATATCGCACAAAGACGAAGAAATGAGTGGTACCGCCA
TTGCCACCACCATGGAAGGCATGCGCCCGCTGATGGTCGAGATACAGGCATTGGTTAGCTCGGCAGTATATGGCACGCCG
CAACGCAGCACTACAGGCTACAATGCCAAAAGGCTCAACATGGTACTGGCCGTACTGGAAAAACGGGCGGGCTTCCGCCT
GGGCGCAAAAGACGTATTCCTGAACATTACCGGTGGCATCAATGTAGACGACCCCGCTATCGACCTTGCCGTAGTAGCCG
CCATTTTATCCTCTAATGAGGATATTCCTGTCAGTAAAGATTTTTGTTTTGCGGGAGAAATAGGGCTTTCGGGAGAGATT
CGCCCTGTAAATCGTGTAGACCAGCGCATACTGGAAGCCGAAAAGTTAGGATTTTCTACTATTTTTGTGTCTAAGTACAA
TAAGATCTCATTAAAGAACACCCTGATCGACATAAGGCTGGTAGCGAAGATAGAAGATGTTGCAAGCCACCTTTTCGGTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(79-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1QWK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.352

100

0.486
  radA Streptococcus pneumoniae Rx1

49.217

98.675

0.486
  radA Streptococcus pneumoniae D39

49.217

98.675

0.486
  radA Streptococcus pneumoniae TIGR4

49.217

98.675

0.486
  radA Streptococcus pneumoniae R6

49.217

98.675

0.486
  radA Streptococcus mitis NCTC 12261

50.351

94.26

0.475
  radA Bacillus subtilis subsp. subtilis str. 168

49.302

94.923

0.468

Multiple sequence alignment