Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AYP37_RS22070 Genome accession   NZ_CP034797
Coordinates   4288675..4289280 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 08-3918     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4283675..4294280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS22040 rsmS 4284377..4284541 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  AYP37_RS22045 priC 4284555..4285082 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  AYP37_RS22050 ybaN 4285152..4285529 (+) 378 WP_001188905.1 DUF454 family protein -
  AYP37_RS22055 apt 4285682..4286233 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  AYP37_RS22060 dnaX 4286362..4288293 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  AYP37_RS22065 ybaB 4288346..4288675 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AYP37_RS22070 recR 4288675..4289280 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AYP37_RS22075 htpG 4289390..4291264 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AYP37_RS22080 adk 4291445..4292089 (+) 645 WP_001220233.1 adenylate kinase -
  AYP37_RS22085 hemH 4292221..4293183 (+) 963 WP_001250105.1 ferrochelatase -
  AYP37_RS22090 aes 4293180..4294139 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=291032 AYP37_RS22070 WP_001195025.1 4288675..4289280(+) (recR) [Escherichia coli strain 08-3918]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=291032 AYP37_RS22070 WP_001195025.1 4288675..4289280(+) (recR) [Escherichia coli strain 08-3918]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACACTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443