Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AYP37_RS14980 Genome accession   NZ_CP034797
Coordinates   2793871..2794539 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 08-3918     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788871..2799539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS14950 rfaQ 2789049..2790107 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AYP37_RS14955 waaA 2790520..2791797 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AYP37_RS14960 coaD 2791805..2792284 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  AYP37_RS14965 mutM 2792323..2793132 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AYP37_RS14970 rpmG 2793230..2793397 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AYP37_RS14975 rpmB 2793418..2793654 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AYP37_RS14980 radC 2793871..2794539 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AYP37_RS14985 coaBC 2794711..2795931 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AYP37_RS14990 dut 2795909..2796367 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AYP37_RS14995 slmA 2796474..2797070 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AYP37_RS15000 pyrE 2797107..2797748 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  AYP37_RS15005 rph 2797814..2798530 (-) 717 WP_001247093.1 ribonuclease PH -
  AYP37_RS15010 yicC 2798657..2799520 (+) 864 WP_000621337.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=291003 AYP37_RS14980 WP_001297375.1 2793871..2794539(-) (radC) [Escherichia coli strain 08-3918]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=291003 AYP37_RS14980 WP_001297375.1 2793871..2794539(-) (radC) [Escherichia coli strain 08-3918]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment