Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DEF50_RS06545 Genome accession   NZ_CP029180
Coordinates   1183875..1184504 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain H9Ecoli     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178875..1189504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEF50_RS06530 (DEF50_06530) helD 1179117..1181171 (-) 2055 WP_001295354.1 DNA helicase IV -
  DEF50_RS06535 (DEF50_06535) yccF 1181294..1181740 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DEF50_RS06540 (DEF50_06540) yccS 1181750..1183912 (+) 2163 WP_072645171.1 YccS family putative transporter -
  DEF50_RS06545 (DEF50_06545) sxy/tfoX 1183875..1184504 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DEF50_RS06550 (DEF50_06550) sulA 1184723..1185232 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DEF50_RS06560 (DEF50_06560) ompA 1185589..1186629 (+) 1041 WP_000750416.1 porin OmpA -
  DEF50_RS06565 (DEF50_06565) matP 1186705..1187157 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DEF50_RS06570 (DEF50_06570) ycbZ 1187343..1189103 (+) 1761 WP_072645170.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=290991 DEF50_RS06545 WP_000839153.1 1183875..1184504(-) (sxy/tfoX) [Escherichia coli strain H9Ecoli]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290991 DEF50_RS06545 WP_000839153.1 1183875..1184504(-) (sxy/tfoX) [Escherichia coli strain H9Ecoli]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment