Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AYP37_RS05445 Genome accession   NZ_CP034797
Coordinates   904149..904625 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 08-3918     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 899149..909625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS05410 - 899314..900219 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  AYP37_RS05415 - 900216..901286 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  AYP37_RS05420 - 901422..902105 (+) 684 WP_000775497.1 hypothetical protein -
  AYP37_RS05425 - 902121..902531 (+) 411 WP_000846711.1 hypothetical protein -
  AYP37_RS05435 - 902752..903573 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  AYP37_RS05440 - 903655..904134 (+) 480 WP_000860080.1 antirestriction protein -
  AYP37_RS05445 radC 904149..904625 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  AYP37_RS05450 yeeT 904688..904909 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  AYP37_RS05455 cbeA 904983..905351 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AYP37_RS05460 cbtA 905440..905813 (+) 374 Protein_942 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AYP37_RS05465 yeeW 905810..906004 (+) 195 WP_000988600.1 DUF5983 family protein -
  AYP37_RS05470 - 906038..906130 (+) 93 Protein_944 hypothetical protein -
  AYP37_RS28915 - 906419..906556 (-) 138 Protein_945 transposase domain-containing protein -
  AYP37_RS29510 - 906619..906801 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  AYP37_RS05485 tmaR 906902..907231 (-) 330 WP_000450409.1 DUF496 family protein -
  AYP37_RS05490 yeeA 907403..908461 (-) 1059 WP_001202488.1 FUSC family protein -
  AYP37_RS05495 sbmC 908660..909133 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=290972 AYP37_RS05445 WP_001186192.1 904149..904625(+) (radC) [Escherichia coli strain 08-3918]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290972 AYP37_RS05445 WP_001186192.1 904149..904625(+) (radC) [Escherichia coli strain 08-3918]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392