Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SGO_RS08580 Genome accession   NC_009785
Coordinates   1816361..1818118 (-) Length   585 a.a.
NCBI ID   WP_012130787.1    Uniprot ID   A8AZ10
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811361..1823118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08555 (SGO_1745) - 1811399..1812280 (-) 882 WP_008809690.1 class II fructose-bisphosphate aldolase -
  SGO_RS08565 (SGO_1747) - 1812720..1813130 (-) 411 WP_012130784.1 GyrI-like domain-containing protein -
  SGO_RS08570 (SGO_1748) - 1813200..1814813 (-) 1614 WP_012130785.1 CTP synthase -
  SGO_RS08575 (SGO_1749) manA 1815253..1816197 (-) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  SGO_RS08580 (SGO_1750) rcrQ 1816361..1818118 (-) 1758 WP_012130787.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08585 (SGO_1751) rcrP 1818108..1819874 (-) 1767 WP_012130788.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08590 (SGO_1752) - 1819867..1820325 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  SGO_RS08595 (SGO_1753) - 1820597..1821166 (-) 570 WP_012130790.1 hypothetical protein -
  SGO_RS08600 (SGO_1754) - 1821176..1821586 (-) 411 WP_012130791.1 peptide deformylase -
  SGO_RS08605 (SGO_1755) scrK 1821635..1822534 (-) 900 WP_012130792.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64782.63 Da        Isoelectric Point: 4.8640

>NTDB_id=29094 SGO_RS08580 WP_012130787.1 1816361..1818118(-) (rcrQ) [Streptococcus gordonii str. Challis substr. CH1]
MENKKISLFTQMKPYIKGFQLPFVIAVTGAVISSIITVFGPYKLREITNLITDGLVGEMDLGAISNIGLFLAFLYIVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQIYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGTTTLQSASAAMGRVFE
FLAEADMEDDSHKLQQLTNVKGHVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQ
IMIDGVDIKDMQRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLSDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMEQGGFYADLYNSQFVEEEQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=29094 SGO_RS08580 WP_012130787.1 1816361..1818118(-) (rcrQ) [Streptococcus gordonii str. Challis substr. CH1]
ATGGAAAATAAAAAAATATCTTTATTTACCCAGATGAAGCCCTATATTAAAGGTTTCCAGCTTCCTTTTGTCATTGCAGT
AACCGGTGCGGTCATCTCTAGTATTATTACAGTCTTTGGTCCTTATAAGTTGCGTGAAATCACAAACTTAATTACAGATG
GTCTAGTAGGCGAGATGGACTTGGGAGCTATCTCAAATATAGGTTTGTTCCTAGCTTTCCTTTATATTGTAGGTTCTCTT
ATCAATTATGCGCAGGGTTATGCTATTTCGGATATGATTCAGCACTTTTCAAAACGCTTGAGAACTGCGATTGCAGAAAA
AATTAATCGCTTGCCCTTAAGTTACTTTGATAGTCATTCTCAAGGTGATACCCTATCACGAGTGACAAATGATGTAGATA
CAGTCGGACAATCGTTGACACAGAGCTTGGGGACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTACTCTTTATGATG
TTTTATACTAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGTTTTGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAGATATATTTCCAAGAACAGCAAAGTAATCTAGCAGCTATTAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGTTACAATGGTGCAGAAAAGACGCGCCTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCCCAATTTATTTCAGGAATTATGTTTCCTCTGATGAACTTCGTTGGCAATTTTGGATATGTGATGGTCGT
GATTGTAGGCGCTACAATGGCTATTAATGGCTCCATTAGCATGGGTACGATTGTAGCTTTCATGGTCTATGTACGAATTT
TTTCTCAACCTCTTTCCCAAATCGCCCAGGGAACTACAACACTCCAATCTGCTAGTGCAGCTATGGGACGTGTCTTTGAG
TTTCTAGCAGAAGCAGATATGGAAGATGATTCTCACAAACTTCAACAATTAACAAATGTAAAAGGACATGTCCAGTTTAA
AGATGTCTTCTTTGGGTACAACCCTGATAAGACTATTATTCATGATTTTTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGCCCTACTGGTGCTGGTAAGACAACAATTGTCAACCTACTCATGAAGTTCTATGATATTGAACGTGGGCAA
ATCATGATTGACGGTGTGGATATCAAGGATATGCAACGCTCAGAAGTTCACGATGCTTTCTCTATGGTTCTACAAGATAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACGGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTATCGGACGGCTATGATACAGTTCTGGATGACACAGTCAGCCTT
TCTGTTGGTCAAAAGCAGCTACTGACTATTGCAAGGGCTCTGCTCAAAGATGCACCACTCCTTATCTTAGATGAGGCGAC
TTCCTCAGTCGATACACGGACAGAGGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGGACTTCCTTTGTCA
TTGCTCACCGCCTATCCACTATTCGCAATGCTGATCTGATCTTAGTTATGCGTGATGGGAATATTATCGAGCAAGGAAGC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCCGATCTTTACAACAGTCAGTTCGTCGAAGAAGAGCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AZ10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.79

99.487

0.704

Multiple sequence alignment