Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A1D74_RS22175 Genome accession   NZ_CP034794
Coordinates   4294021..4294689 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 06-3462     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4289021..4299689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS22145 rfaQ 4289199..4290257 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  A1D74_RS22150 waaA 4290670..4291947 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A1D74_RS22155 coaD 4291955..4292434 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A1D74_RS22160 mutM 4292473..4293282 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A1D74_RS22165 rpmG 4293380..4293547 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  A1D74_RS22170 rpmB 4293568..4293804 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  A1D74_RS22175 radC 4294021..4294689 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A1D74_RS22180 coaBC 4294861..4296081 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A1D74_RS22185 dut 4296059..4296517 (+) 459 WP_000976070.1 dUTP diphosphatase -
  A1D74_RS22190 slmA 4296624..4297220 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A1D74_RS22195 pyrE 4297257..4297898 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  A1D74_RS22200 rph 4297964..4298680 (-) 717 WP_001247093.1 ribonuclease PH -
  A1D74_RS22205 yicC 4298807..4299670 (+) 864 WP_000621337.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=290939 A1D74_RS22175 WP_001297375.1 4294021..4294689(-) (radC) [Escherichia coli strain 06-3462]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=290939 A1D74_RS22175 WP_001297375.1 4294021..4294689(-) (radC) [Escherichia coli strain 06-3462]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496