Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A1D74_RS17125 Genome accession   NZ_CP034794
Coordinates   3276414..3276929 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 06-3462     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271414..3281929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS17100 ygaZ 3271813..3272550 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  A1D74_RS17105 ygaH 3272540..3272875 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  A1D74_RS17110 emrR 3272966..3273496 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A1D74_RS17115 emrA 3273623..3274795 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A1D74_RS17120 emrB 3274812..3276350 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A1D74_RS17125 luxS 3276414..3276929 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  A1D74_RS17130 gshA 3277079..3278635 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  A1D74_RS17135 yqaA 3278708..3279136 (-) 429 WP_001287450.1 YqaA family protein -
  A1D74_RS17140 yqaB 3279133..3279699 (-) 567 WP_000273311.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A1D74_RS17170 csrA 3280927..3281112 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=290919 A1D74_RS17125 WP_001130215.1 3276414..3276929(-) (luxS) [Escherichia coli strain 06-3462]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290919 A1D74_RS17125 WP_001130215.1 3276414..3276929(-) (luxS) [Escherichia coli strain 06-3462]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment