Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A1D74_RS13090 Genome accession   NZ_CP034794
Coordinates   2463088..2464512 (+) Length   474 a.a.
NCBI ID   WP_000132546.1    Uniprot ID   -
Organism   Escherichia coli strain 06-3462     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2458088..2469512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS13040 - 2458252..2458467 (+) 216 WP_000188870.1 hypothetical protein -
  A1D74_RS13045 - 2458566..2458787 (+) 222 WP_000763383.1 TraR/DksA family transcriptional regulator -
  A1D74_RS13050 - 2458784..2459731 (+) 948 WP_001289930.1 ead/Ea22-like family protein -
  A1D74_RS13055 - 2459733..2459909 (+) 177 WP_001356547.1 hypothetical protein -
  A1D74_RS13065 - 2460243..2460599 (+) 357 WP_000207903.1 hypothetical protein -
  A1D74_RS13070 - 2460596..2460946 (+) 351 WP_000610373.1 DUF551 domain-containing protein -
  A1D74_RS13075 - 2461134..2461478 (+) 345 WP_001281188.1 hypothetical protein -
  A1D74_RS13080 - 2461556..2461747 (+) 192 WP_000132739.1 AlpA family transcriptional regulator -
  A1D74_RS13085 - 2461728..2462906 (-) 1179 WP_001007946.1 site-specific integrase -
  A1D74_RS13090 sbcB 2463088..2464512 (+) 1425 WP_000132546.1 exodeoxyribonuclease I Machinery gene
  A1D74_RS13095 tsuB 2464555..2464782 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A1D74_RS13100 tsuA 2464796..2465854 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  A1D74_RS13105 plaP 2466033..2467391 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A1D74_RS13110 yoeI 2467381..2467443 (-) 63 WP_010723108.1 membrane protein YoeI -
  A1D74_RS13115 yeeY 2467658..2468587 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  A1D74_RS13120 yeeZ 2468633..2469457 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.63 Da        Isoelectric Point: 5.2440

>NTDB_id=290910 A1D74_RS13090 WP_000132546.1 2463088..2464512(+) (sbcB) [Escherichia coli strain 06-3462]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=290910 A1D74_RS13090 WP_000132546.1 2463088..2464512(+) (sbcB) [Escherichia coli strain 06-3462]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGATAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584