Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A1D74_RS12560 Genome accession   NZ_CP034794
Coordinates   2396768..2397244 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 06-3462     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391768..2402244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS12525 - 2391933..2392838 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  A1D74_RS12530 - 2392835..2393905 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  A1D74_RS12535 - 2394041..2394724 (+) 684 WP_001496501.1 hypothetical protein -
  A1D74_RS12540 - 2394740..2395150 (+) 411 WP_000846711.1 hypothetical protein -
  A1D74_RS12550 - 2395371..2396192 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  A1D74_RS12555 - 2396274..2396753 (+) 480 WP_000860080.1 antirestriction protein -
  A1D74_RS12560 radC 2396768..2397244 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  A1D74_RS12565 yeeT 2397307..2397528 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  A1D74_RS12570 cbeA 2397602..2397970 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A1D74_RS12575 cbtA 2398059..2398432 (+) 374 Protein_2406 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A1D74_RS12580 yeeW 2398429..2398623 (+) 195 WP_000988600.1 DUF5983 family protein -
  A1D74_RS12585 - 2398657..2398749 (+) 93 Protein_2408 hypothetical protein -
  A1D74_RS28805 - 2399038..2399175 (-) 138 Protein_2409 transposase domain-containing protein -
  A1D74_RS29345 - 2399238..2399420 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A1D74_RS12600 tmaR 2399521..2399850 (-) 330 WP_000450409.1 DUF496 family protein -
  A1D74_RS12605 yeeA 2400022..2401080 (-) 1059 WP_001202488.1 FUSC family protein -
  A1D74_RS12610 sbmC 2401279..2401752 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=290909 A1D74_RS12560 WP_001186192.1 2396768..2397244(+) (radC) [Escherichia coli strain 06-3462]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290909 A1D74_RS12560 WP_001186192.1 2396768..2397244(+) (radC) [Escherichia coli strain 06-3462]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392