Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | A1D74_RS05910 | Genome accession | NZ_CP034794 |
| Coordinates | 1193810..1194286 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain 06-3462 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1188810..1199286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A1D74_RS05885 | - | 1190088..1190993 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| A1D74_RS05890 | - | 1190990..1192060 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| A1D74_RS05900 | - | 1192400..1193218 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| A1D74_RS05905 | - | 1193309..1193794 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| A1D74_RS05910 | radC | 1193810..1194286 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| A1D74_RS05915 | - | 1194349..1194570 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| A1D74_RS05920 | - | 1194733..1195107 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| A1D74_RS05925 | - | 1195154..1195528 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| A1D74_RS05930 | - | 1195525..1196016 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| A1D74_RS05935 | - | 1196028..1196225 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| A1D74_RS05940 | - | 1196310..1197152 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| A1D74_RS05950 | ghrA | 1197623..1198561 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=290897 A1D74_RS05910 WP_001186738.1 1193810..1194286(+) (radC) [Escherichia coli strain 06-3462]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=290897 A1D74_RS05910 WP_001186738.1 1193810..1194286(+) (radC) [Escherichia coli strain 06-3462]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |