Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A1D74_RS04560 Genome accession   NZ_CP034794
Coordinates   960398..961027 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 06-3462     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 955398..966027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS04540 ycbZ 955800..957560 (-) 1761 WP_000156526.1 Lon protease family protein -
  A1D74_RS04545 matP 957746..958198 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A1D74_RS04550 ompA 958273..959313 (-) 1041 WP_000750416.1 porin OmpA -
  A1D74_RS04555 sulA 959670..960179 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A1D74_RS04560 sxy/tfoX 960398..961027 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A1D74_RS04565 yccS 960990..963152 (-) 2163 WP_000875023.1 YccS family putative transporter -
  A1D74_RS04570 yccF 963162..963608 (-) 447 WP_001261230.1 YccF domain-containing protein -
  A1D74_RS04575 helD 963731..965785 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=290896 A1D74_RS04560 WP_000839159.1 960398..961027(+) (sxy/tfoX) [Escherichia coli strain 06-3462]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290896 A1D74_RS04560 WP_000839159.1 960398..961027(+) (sxy/tfoX) [Escherichia coli strain 06-3462]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995