Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DR788_RS24000 Genome accession   NZ_CP034792
Coordinates   4702608..4703276 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 2009C-3378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4697608..4708276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS23970 yicC 4697627..4698490 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  DR788_RS23975 rph 4698617..4699333 (+) 717 WP_001247093.1 ribonuclease PH -
  DR788_RS23980 pyrE 4699399..4700040 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  DR788_RS23985 slmA 4700077..4700673 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DR788_RS23990 dut 4700780..4701238 (-) 459 WP_000976070.1 dUTP diphosphatase -
  DR788_RS23995 coaBC 4701216..4702436 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DR788_RS24000 radC 4702608..4703276 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  DR788_RS24005 rpmB 4703493..4703729 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  DR788_RS24010 rpmG 4703750..4703917 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  DR788_RS24015 mutM 4704015..4704824 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DR788_RS24020 coaD 4704863..4705342 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  DR788_RS24025 waaA 4705350..4706627 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DR788_RS24030 rfaQ 4707040..4708098 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=290871 DR788_RS24000 WP_001297375.1 4702608..4703276(+) (radC) [Escherichia coli strain 2009C-3378]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=290871 DR788_RS24000 WP_001297375.1 4702608..4703276(+) (radC) [Escherichia coli strain 2009C-3378]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496