Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DR788_RS13695 Genome accession   NZ_CP034792
Coordinates   2546436..2547065 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain 2009C-3378     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541436..2552065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS13680 helD 2541678..2543732 (-) 2055 WP_001301436.1 DNA helicase IV -
  DR788_RS13685 yccF 2543855..2544301 (+) 447 WP_001261230.1 YccF domain-containing protein -
  DR788_RS13690 yccS 2544311..2546473 (+) 2163 WP_000875023.1 YccS family putative transporter -
  DR788_RS13695 sxy/tfoX 2546436..2547065 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DR788_RS13700 sulA 2547284..2547793 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DR788_RS13705 ompA 2548150..2549190 (+) 1041 WP_000750416.1 porin OmpA -
  DR788_RS13710 matP 2549265..2549717 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DR788_RS13715 ycbZ 2549903..2551663 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=290834 DR788_RS13695 WP_000839159.1 2546436..2547065(-) (sxy/tfoX) [Escherichia coli strain 2009C-3378]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290834 DR788_RS13695 WP_000839159.1 2546436..2547065(-) (sxy/tfoX) [Escherichia coli strain 2009C-3378]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995